Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58490 526 / 0 AtSPP1 sphingoid phosphate phosphatase 1, Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000850 [exp] 752 / 0 AT3G58490 592 / 0.0 sphingoid phosphate phosphatase 1, Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062100 [exp] 592 / 0 AT3G58490 575 / 0.0 sphingoid phosphate phosphatase 1, Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.006G196200 [exp] 575 / 0 AT3G58490 591 / 0.0 sphingoid phosphate phosphatase 1, Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10015975 pacid=23154446 polypeptide=Lus10015975 locus=Lus10015975.g ID=Lus10015975.BGIv1.0 annot-version=v1.0 ATGGAGAGCATAGCATTGTGGCAAGCGTCGGCTCTCTGTGGGATAGCATCCTGGATTGCCTTTTCCCCCTGCTTCAACGTCACCCACAAGCTCCGATCTC TGCTCCAGCCATGGGTCTCCCGCCACGTCGCCGCCGGAACCCCCGCCGTTCTCCGGATCCAGAACTACCAGCATAAGTATTTGGACGCTTTGTTCTCCGG CTTGTCATGTGTGGTCTCCGTCCCCTTTTACACGGCTTTTCTTCCTTTCCTGTTCTGGAGTGGGCATGGGAAATTGGCTAGGCAGATGACACTTTTGATG GCTTTCTGTGATTATTCAGGCAACTGTATCAAGGATGTGGTGTCAGCTCCTAGACCTAGTAGCCCTCCAGTTAGGAGAATTACTGCTACAAAGGATGAAG AAGACAATGCTTTGGAATATGGGTTGCCTTCTTCCCATACTCTCAATACTGTCTGTTTGTCCGGGTATCTTTTGTGCTATGTTTTGTCTTACATCGAAAA TCAGGATTTATCATCAACCCTGGCTGGAGTTGCCATTGTTTGCTTGCTTGTTGGCCTCACTGGTTGGGGAAGAATATACCTTGGCATGCACAGCTTGATT GATATCATTGCTGGTCTTGTTTTTGGCATCCTGATCCTCGCCTTTTGGATGACCGTCCATGATCGTATCGACAGCTTCATTGTCTCGGGACAAAATGTCA CTACATTTTGGGCCACCTTGAGCTTCTTGTTGCTTTTTGCTTATCCAACTCCCGAGTTCCCAACTCCAAGCTTCGAATTCCACACAGCCTTTGATGGTGT TGCATTCGGAATAGTGGCTGGAATCCAACAAACCTACCATCAGTTCCACCACGAAACCGTGCCAAGGATATGCACACCGGAGCTCCCAATCCAGGCCTTC CTGGGGAGAGTGGCAGTTGGAATCCCGACGATTCTCCTGGTCAAGTTCTGCAGCAAAGCCCTGGCCAAGTGGATCCTCCCGGTAGTGTCGAACACATTGG GTATTCCCATACGATCAACCACGTACATAACGGTACTAAATTCAGCAGGGAAGAAACCAGTCAAACAGCAGCAGCAGTCAGGAGGGTATATCCAGAAACT ATTCTTTTTGTCTAACCAGGATTCGTTCGACGTTGATACTGGCATCCGATTCATCCAGTACTCGGGCCTTGCGTGGTCTGTCGTTGACCTCGTTCCGTCT ATTTTCTCATACCTTGGATTGTAG
AA sequence Show only first row Show all	>Lus10015975 pacid=23154446 polypeptide=Lus10015975 locus=Lus10015975.g ID=Lus10015975.BGIv1.0 annot-version=v1.0 MESIALWQASALCGIASWIAFSPCFNVTHKLRSLLQPWVSRHVAAGTPAVLRIQNYQHKYLDALFSGLSCVVSVPFYTAFLPFLFWSGHGKLARQMTLLM AFCDYSGNCIKDVVSAPRPSSPPVRRITATKDEEDNALEYGLPSSHTLNTVCLSGYLLCYVLSYIENQDLSSTLAGVAIVCLLVGLTGWGRIYLGMHSLI DIIAGLVFGILILAFWMTVHDRIDSFIVSGQNVTTFWATLSFLLLFAYPTPEFPTPSFEFHTAFDGVAFGIVAGIQQTYHQFHHETVPRICTPELPIQAF LGRVAVGIPTILLVKFCSKALAKWILPVVSNTLGIPIRSTTYITVLNSAGKKPVKQQQQSGGYIQKLFFLSNQDSFDVDTGIRFIQYSGLAWSVVDLVPS IFSYLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10015975 [exp]	0	1
AT2G30530			unknown protein		Lus10019115 [exp]	1.0	0.9185
AT5G36160			Tyrosine transaminase family p...		Lus10033659 [exp]	18.4	0.9179
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004120 [exp]	21.6	0.9137
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10000115 [exp]	25.1	0.8674
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10013198 [exp]	32.6	0.9145
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10015184 [exp]	34.3	0.8655
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10013774 [exp]	43.5	0.8613
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10033994 [exp]	44.1	0.8636
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10043219 [exp]	44.7	0.9016
AT2G47485			unknown protein		Lus10028487 [exp]	45.4	0.8596

Compare expression of checked genes

Lus10015975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.