Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42520 767 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 753 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT3G58570 751 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 352 / 1e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G14610 343 / 1e-109 DEAD box RNA helicase family protein (.1.2) AT1G55150 335 / 2e-108 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 338 / 4e-108 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT2G33730 319 / 1e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G06480 319 / 8e-97 DEAD box RNA helicase family protein (.1) AT5G51280 305 / 9e-96 DEAD-box protein abstrakt, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000849 [exp] 904 / 0 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 828 / 0 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 808 / 0 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029337 [exp] 720 / 0 AT2G42520 728 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000848 [exp] 717 / 0 AT2G42520 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 585 / 0 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015978 [exp] 576 / 0 AT3G58570 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 520 / 0 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 339 / 2e-108 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G196000 [exp] 752 / 0 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 751 / 0 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 749 / 0 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 746 / 0 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 345 / 9e-111 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 341 / 3e-109 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 342 / 8e-108 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.003G038300 [exp] 333 / 2e-107 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G347100 [exp] 334 / 8e-105 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.019G130900 [exp] 327 / 2e-104 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10015976 pacid=23154421 polypeptide=Lus10015976 locus=Lus10015976.g ID=Lus10015976.BGIv1.0 annot-version=v1.0 ATGACTACTCGATGGGCTGATTCTGTGGCTAGCTCTGCTTCTGACAATGCCGGTTCAGGCTCTGGACGTTCTGCCTATGTTCCACCCCATCAACGCAATA GACCTCCATCTGCTGCTCCTGCAGCTCAACCCTTTGCGGCCCCATCCCCGCCTAATGACCGTGTAGGAGGTTATGGTGGACCGCCAGGTGGTTCTCGCTG GGGTGGTGCTCCAAGAGCAGATCCGGGGAGAGGAGGAGGATATGGTTATGGTGGTGGCCGAGGTGGCGGTGGTTATAATAATAGAGGAGGTGGATGGAAC CGAGAGGTGAATCCCTTTGGAGAAGAAGAAGCTGATGCAGAATGTGCACCGAGTGGGCAAGATAGTACTGGCATTAACTTTGATGCGTATGAAGATATTC CTGTGGATGCCAGTGGGGACAATGTGCCTCCTCCTGTAAATACCTTTGCAGAGATTGACTTGGGTGATGCAGTAAATCAAAATATACGGAGATGCAAGTA TGTGAGACCAACACCCGTTCAGCGCCATGCAATCCCTATATTGCTTGCCGGACGTGACTTGATGGCCTGTGCTCAGACAGGTTCGGGAAAGACTGCTGCT TTTTGCTTTCCGATAATTAATGGAATTATGCGGGATACTCATATACAGAGACCTCGTGCTCCTAGAACTGCATTCCCTCTTGCTCTTATTCTCTCACCTA CAAGAGAACTATCTTCCCAGATACATGATGAAGCCAAAAAATTTTCTTATCAAACTGGTGTAAGAGTGGTTGTTGCTTATGGAGGGGCACCAATTATGAA TCAGTTGAGAGAACTTGAAAGGGGGGTTGATATTCTCGTAGCTACTCCGGGTCGATTGGTTGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATC AGATTCCTTGCACTCGATGAGGCTGATAGGATGCTTGATATGGGATTTGAGCCTCAAATCAGAAAGATAGTTGAACAAGTGGACATGCCTCCATCTGGGA TGAGGCAGACTATGCTTTTTAGTGCTACTTTCCCAAAAGAAATACAGAGACTTGCATCAGACTTCCTTTCAAATTACATTTTCTTGGCTGTTGGAAGGGT TGGCTCCAGCACTGATTTGATTCTTCAGAGAGTTGAATATGTCCAAGATGCTGACAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAGAAAGAAAGT GAAGCTAATAGCAAGCCATCCTTGACATTAGTGTTTGTGGAGACCAAGAAGGGAGCCGATTCTCTGGAGTATTGGCTGTGTCAAAGCGGGTTCCCCGCCA CTACAATTCATGGTGATAGATCACAGCAGGAAAGAGAACTTGCATTGAGATCCTTCAAGAGTGGAAGGACCCCAATTCTAGTGGCACCAGACGTAGCGGC TCGTGGTCTAGACATACCGCATGTGGCACACGTCGTCAACTTCGACCTCCCCAACGACATCGACGATTATGTCCACAGAATAGGACGTACCGGACGAGCT GGGAAATCTGGTCTTGCTACAGCCTTCTTCAACGACAACAACGGCTCATTGGCAAGGTCACTAGTAGAATTGATGCAAGAAGCAAACCAAGAAGTTCCCG CTTGGCTAGTCCGATACGCGTCACGCTCTTCGTACGGTGGAGGCAAGAATCGCCGGTCTGGCGGAGGGCGCTTTGGTGGACGAGACATCAGAAGGGAAGG GTCCTTCAGTAGGGGAGGTGGAGACTATCACCGCGGCGGGAGCAGCGGTGGTGGCGGTAGTTACGGGGTCCCTGGAGGTGGTTATGGCATGGGTTCAGGA GTGACCAGTGCTTGGGATTAG
AA sequence Show only first row Show all	>Lus10015976 pacid=23154421 polypeptide=Lus10015976 locus=Lus10015976.g ID=Lus10015976.BGIv1.0 annot-version=v1.0 MTTRWADSVASSASDNAGSGSGRSAYVPPHQRNRPPSAAPAAQPFAAPSPPNDRVGGYGGPPGGSRWGGAPRADPGRGGGYGYGGGRGGGGYNNRGGGWN REVNPFGEEEADAECAPSGQDSTGINFDAYEDIPVDASGDNVPPPVNTFAEIDLGDAVNQNIRRCKYVRPTPVQRHAIPILLAGRDLMACAQTGSGKTAA FCFPIINGIMRDTHIQRPRAPRTAFPLALILSPTRELSSQIHDEAKKFSYQTGVRVVVAYGGAPIMNQLRELERGVDILVATPGRLVDLLERARVSLQMI RFLALDEADRMLDMGFEPQIRKIVEQVDMPPSGMRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLILQRVEYVQDADKRSHLMDLLHAQKES EANSKPSLTLVFVETKKGADSLEYWLCQSGFPATTIHGDRSQQERELALRSFKSGRTPILVAPDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA GKSGLATAFFNDNNGSLARSLVELMQEANQEVPAWLVRYASRSSYGGGKNRRSGGGRFGGRDIRREGSFSRGGGDYHRGGSSGGGGSYGVPGGGYGMGSG VTSAWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42520			P-loop containing nucleoside t...		Lus10015976 [exp]	0	1
AT2G38840			Guanylate-binding family prote...		Lus10018755 [exp]	1.0	0.9224
AT1G75800			Pathogenesis-related thaumatin...		Lus10034534 [exp]	2.6	0.8883
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10028880 [exp]	3.6	0.8834
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10042283 [exp]	4.2	0.9189
AT1G47290		AT3BETAHSD/D1	3beta-hydroxysteroid-dehydroge...		Lus10000358 [exp]	18.3	0.8616
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	23.7	0.8703
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007739 [exp]	26.3	0.8996
AT1G51980			Insulinase (Peptidase family M...		Lus10038262 [exp]	32.4	0.8938
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Lus10022120 [exp]	35.2	0.8873
					Lus10042887 [exp]	35.6	0.8914

Compare expression of checked genes

Lus10015976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.