Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42520 719 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 712 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 712 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT5G63120 352 / 2e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 337 / 1e-110 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 337 / 6e-109 DEAD box RNA helicase family protein (.1.2) AT3G01540 335 / 3e-108 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT2G33730 313 / 1e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G06480 314 / 2e-96 DEAD box RNA helicase family protein (.1) AT5G51280 300 / 2e-95 DEAD-box protein abstrakt, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000849 [exp] 810 / 0 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 808 / 0 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 764 / 0 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000848 [exp] 722 / 0 AT2G42520 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029337 [exp] 655 / 0 AT2G42520 728 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 587 / 0 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015978 [exp] 581 / 0 AT3G58570 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 522 / 0 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 340 / 2e-110 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G196000 [exp] 706 / 0 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 706 / 0 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 704 / 0 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 702 / 0 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 339 / 6e-110 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 335 / 1e-109 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G084600 [exp] 337 / 3e-109 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 335 / 8e-107 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.019G130900 [exp] 327 / 3e-106 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 324 / 5e-105 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10015977 pacid=23154455 polypeptide=Lus10015977 locus=Lus10015977.g ID=Lus10015977.BGIv1.0 annot-version=v1.0 ATGCTGGTTCAGGCGCTGGACGTTCTGCCTACGTCCCACCCCACCAACGTAATAGACCACCATCTGCTGCTCCTGCAGCTCAACCCTTTGCGGCATGTGC CTCCTCCTGTAAATACCTTTGCAGAGATTGACTTGGGGGATGCAGTAAATCAAAATATACGGAGATGCAAGTATGTGAGACCAACACCCGTTCAGCGCCA TGCAATCCCTATATTGCTTGCCGGACGTGACTTGATGGCCTGTGCTCAGACAGGTTCGGGAAAGACTGCTGCTTTTTGCTTTCCGATAATTAATGGAATT ATGCGGGATACTCATATACAGAGACCTCGTGCTCCTAGAACTGCATTCCCTCTTGCTCTTATTCTCTCACCTACAAGAGAGCTATCTTCTCAGATACATG ATGAAGCCAAAAAATTTTCTTACCAAACTGGTGTAAGAGTGGTTGTTGCTTATGGAGGGGCACCGATTGTGAATCAGTTGAGAGAACTTGAAAGGGGAGT TGATATTCTTGTAGCAACTCCGGGTCGATTGGTTGACTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATCAGATTCTTGGCACTTGATGAGGCTGAT AGGATGCTTGATATGGGATTTGAGCCTCAGATCAGAAAGATAGTTGAACAATTGGACATGCCCCCATCTGGGATGAGGCAGACTATGCTTTTCAGTGCTA CTTTTCCTAAAGAAATACAGAGACTTGCTTCAGATTTCCTATCAAATTACATTTTCTTGGCTGTTGGAAGGGTTGGCTCCAGCACTGACTTGATTCTTCG GAGAGTTGAGTATGTTCAAGAGGCTGACAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAGAAAGAAAGTGAAGCTAATAGCAAGCCATCCTTGACA TTAGTGTTTGTGGAGACCAAGAAGGGAGCTGATTCTCTGGAGTATTGGTTGTGTCAAAACGGGTTCCCTGCTACTACAATTCATGGTGATAGATCACAGC AGGAAAGAGAACTTGCATTGAGATCCTTCAAGAGTGGAAGGACCCCAATTCTAGTGGCGACAGACGTAGCTGCCCGTGGTCTGGACATACCTCACGTGGC TCATGTCGTCAACTTCGATCTCCCCAACGACATCGACGATTACGTCCACAGAATAGGCCGTACCGGGCGAGCTGGGAAATCCGGCCTGGCTACAGCCTTC TTCAACGACAACAACGGCTCTTTGGCAAGGTCGCTGGTCGAGTTGATGCAAGAAGCAAATCAAGAAGTTCCTGCCTGGTTAGTCCGATACGCTTCACGCT CGTCGTACGGCGGAGGCAAGAATCGCCGATCTGGCGGAGGGCGCTTTGGTGGACGGGACATCAGAAGGGAAGGATCGTTCAGTAGAGGTGGAGGAGATTA TCACGGTGGAGGAGGGAGCAGCGGCGGCGGTGGTTACGGAGTCCCCAGAGGTGGTTATGGCATGGGTTCAGGTGTGACCAGCGCCTGGGATTAG
AA sequence Show only first row Show all	>Lus10015977 pacid=23154455 polypeptide=Lus10015977 locus=Lus10015977.g ID=Lus10015977.BGIv1.0 annot-version=v1.0 MLVQALDVLPTSHPTNVIDHHLLLLQLNPLRHVPPPVNTFAEIDLGDAVNQNIRRCKYVRPTPVQRHAIPILLAGRDLMACAQTGSGKTAAFCFPIINGI MRDTHIQRPRAPRTAFPLALILSPTRELSSQIHDEAKKFSYQTGVRVVVAYGGAPIVNQLRELERGVDILVATPGRLVDLLERARVSLQMIRFLALDEAD RMLDMGFEPQIRKIVEQLDMPPSGMRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLILRRVEYVQEADKRSHLMDLLHAQKESEANSKPSLT LVFVETKKGADSLEYWLCQNGFPATTIHGDRSQQERELALRSFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF FNDNNGSLARSLVELMQEANQEVPAWLVRYASRSSYGGGKNRRSGGGRFGGRDIRREGSFSRGGGDYHGGGGSSGGGGYGVPRGGYGMGSGVTSAWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42520			P-loop containing nucleoside t...		Lus10015977 [exp]	0	1
AT1G79220			Mitochondrial transcription te...		Lus10031184 [exp]	3.9	0.8996
AT4G35890			winged-helix DNA-binding trans...		Lus10014254 [exp]	8.2	0.9156
AT4G24290			MAC/Perforin domain-containing...		Lus10000175 [exp]	8.2	0.8844
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10035115 [exp]	8.2	0.8702
AT3G58570			P-loop containing nucleoside t...		Lus10015978 [exp]	8.4	0.8966
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	9.5	0.9072
AT4G16180			unknown protein		Lus10017062 [exp]	14.3	0.8968
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Lus10020290 [exp]	14.8	0.9025
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10031816 [exp]	19.7	0.8921
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	20.8	0.8893

Compare expression of checked genes

Lus10015977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.