Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58570 516 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 513 / 2e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 509 / 1e-178 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT5G63120 270 / 2e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G14610 268 / 3e-84 DEAD box RNA helicase family protein (.1.2) AT3G01540 263 / 1e-82 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G55150 254 / 2e-80 DEA(D/H)-box RNA helicase family protein (.1) AT3G06480 254 / 6e-76 DEAD box RNA helicase family protein (.1) AT5G51280 239 / 1e-73 DEAD-box protein abstrakt, putative (.1) AT4G33370 233 / 7e-72 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000848 [exp] 585 / 0 AT2G42520 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 581 / 0 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 577 / 0 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 576 / 0 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 555 / 0 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029337 [exp] 446 / 2e-155 AT2G42520 728 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 441 / 5e-152 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 434 / 1e-151 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 265 / 3e-83 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007900 [exp] 510 / 1e-178 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 508 / 4e-178 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 508 / 9e-178 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 507 / 1e-177 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G084600 [exp] 264 / 8e-83 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G083000 [exp] 263 / 2e-82 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G347100 [exp] 263 / 5e-81 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.017G071400 [exp] 263 / 7e-81 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.003G038300 [exp] 254 / 4e-80 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G152400 [exp] 263 / 3e-79 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10015978 pacid=23154391 polypeptide=Lus10015978 locus=Lus10015978.g ID=Lus10015978.BGIv1.0 annot-version=v1.0 ATGCTAGCACCTTTGCCGCGAGTGGTTGTTGCTTATGGAGGGGCACCGATTGTGAATCAGTTGAGAGAACTTGAAAGGGGAGTTGATATTCTTGTAGCAA CTCCGGGTCGATTGGTTGACTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATCAGATTCTTGGCACTTGATGAGGCTGATAGGATGCTTGATATGGG ATTTGAGCCTCAGATCAGAAAGATAGTTGAACAATTGGACATGCCCCCATCTGGGATGAGGCAGACTATGCTTTTCAGTGCTACTTTTCCTAAAGAAATA CAGAGACTTGCTTCAGATTTCCTATCAAATTACATTTTCTTGGCTGTTGGAAGGGTTGGCTCCAGCACTGACTTGATTCTTCAGAGAGTTGAGTATGTTC AAGATGCTGACAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAGAAAGAAAGTGAAGCTAATAGCAAGCCATCCTTGACATTAGTGTTTGTGGAGAC CAAGAAGGGAGCTGATTCTCTGGAGTATTGGTTGTGTCAAAACGGGTTCCCTGCTACTACAATTCATGGTGATAGATCACAGCAGGAAAGAGAACTTGCA TTGAGATCCTTCAAGAGTGGAAGGACCCCAATTCTAGTGGCGACAGACGTAGCTGCCCGTGGTCTGGACATACCTCACGTGGCTCATGTCGTCAACTTCG ATCTCCCCAACGACATCGACGATTACGTCCACAGAATAGGCCGTACCGGGCGAGCTGGGAAATCCGGCCTGGCTACAGCCTTCTTCAACGACAACAACGG CTCTTTGGCAAGGTCGCTGGTCGAGTTGATGCAAGAAGCAAATCAAGAAGTTCCTGCCTGGTTAGTCCGATACGCTTCACGCTCGTCGTACGGCGGAGGC AAGAATCGCCGATCTGGCGGAGGGCGCTTTGGTGGACGAGACATCAGAAGGGAAGGATCCTTCAGTAGGGGAGGTGGAGACTATCACGGTGGGGGCGGCG CTTTCAGTAGAGGTGGTGGAGATTATCACGGTGGAGGAGGAGGCAGCGGCGGCGGTGGTTACGGAGTCCCCGGAGGTGGTTATGGCATGGGTTCAGGTGT GACTAGCGCTTGGGATTAG
AA sequence Show only first row Show all	>Lus10015978 pacid=23154391 polypeptide=Lus10015978 locus=Lus10015978.g ID=Lus10015978.BGIv1.0 annot-version=v1.0 MLAPLPRVVVAYGGAPIVNQLRELERGVDILVATPGRLVDLLERARVSLQMIRFLALDEADRMLDMGFEPQIRKIVEQLDMPPSGMRQTMLFSATFPKEI QRLASDFLSNYIFLAVGRVGSSTDLILQRVEYVQDADKRSHLMDLLHAQKESEANSKPSLTLVFVETKKGADSLEYWLCQNGFPATTIHGDRSQQERELA LRSFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDNNGSLARSLVELMQEANQEVPAWLVRYASRSSYGGG KNRRSGGGRFGGRDIRREGSFSRGGGDYHGGGGAFSRGGGDYHGGGGGSGGGGYGVPGGGYGMGSGVTSAWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58570			P-loop containing nucleoside t...		Lus10015978 [exp]	0	1
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	8.4	0.9107
AT2G42520			P-loop containing nucleoside t...		Lus10015977 [exp]	8.4	0.8966
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10025686 [exp]	9.9	0.9079
AT5G35400			Pseudouridine synthase family ...		Lus10027594 [exp]	15.9	0.8915
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10014330 [exp]	19.3	0.9036
AT1G36280			L-Aspartase-like family protei...		Lus10028260 [exp]	21.9	0.8998
AT1G24310			unknown protein		Lus10015795 [exp]	26.8	0.9011
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10019766 [exp]	36.5	0.8872
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10042688 [exp]	36.7	0.8926
AT4G11120			translation elongation factor ...		Lus10016073 [exp]	39.4	0.8975

Compare expression of checked genes

Lus10015978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.