Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58520 561 / 0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G48040 254 / 2e-80 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 206 / 2e-61 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G39120 202 / 1e-60 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G24320 179 / 5e-52 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 165 / 4e-46 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 163 / 8e-46 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 164 / 1e-45 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT2G31290 142 / 1e-37 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G01037 140 / 2e-36 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000847 [exp] 681 / 0 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10011327 [exp] 246 / 3e-77 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012201 [exp] 244 / 1e-76 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10035074 [exp] 210 / 3e-61 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10017896 [exp] 209 / 8e-61 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10038710 [exp] 199 / 6e-59 AT2G39120 467 / 4e-164 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000096 [exp] 167 / 4e-47 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 167 / 5e-47 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016529 [exp] 155 / 2e-42 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195900 [exp] 612 / 0 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G230900 [exp] 264 / 3e-84 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 222 / 3e-65 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.008G036600 [exp] 204 / 5e-61 AT2G39120 509 / 0.0 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.004G223200 [exp] 193 / 1e-56 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 167 / 4e-47 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 158 / 1e-43 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.005G191100 [exp] 158 / 1e-43 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.006G218100 [exp] 152 / 2e-41 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 144 / 1e-37 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10015979 pacid=23154405 polypeptide=Lus10015979 locus=Lus10015979.g ID=Lus10015979.BGIv1.0 annot-version=v1.0 ATGATCTCCAGAACCCGCCACCAGTCCATCAGACACCTTCTACTTCTCTGCAGAGCTTCCTCGCCGGAATCCACCAACAACTCCGTCGCCGTTCTCCACC GCAGCCATTTTCTCAATCAGCAGCATCGATCCATCACGAAAGTAAGGCTAAAATGGGTTAAGAACCGCAGCATCGATCACATTATCGACGTCGAGACCGA TCTCAAGGCCGCTTCTCTTCTCAAAGACGCAATCAAGCGCTCCCCAACTGGGTTCCTCACTGCTCAGTCGTTCGCCGACTGGCAGAAGCTGCTCGGCCTC ACTGTCCCCGTCCTTCGCTTCTTGCGCAGGTATCCAACTCTTTTCGAGGAATTTCCACATGCCCGGTACGCGAATTTGCCATGCTTTCGGCTCACCAAAA CTGCACAATTGTTGGATTCACAAGAACAGGACATTCACCAAGCTCACGAGAGTAAGACTGTGGAGAGGCTGGCTAGGGTTCTTATGATGATGAAAACTAG GACAGTACCAATTCAGTCACTCCACCCACTCAAATGGGATTTAGGTCTACCAGATCATTTCGAAAGAACGTTGGTTCCCAAGTACCCCGATCATTTCCGA GTACTCAAGGCAACTAACGGGATCGGATGCTTGCAGCTCGCGGACTGGAAGGACGAGTATGCGGTATCTGAGCTGCTGAGGAGCCACGAGAGCAAAGAAA CGGGCGATGAGTATAGACCATTTAAGCGAGGGCAGGCAGCATTGGCCTTCCCAATGAGTTTTCCGAGAGGGTATGGAGGTCAGAAGAAAGTAAGAGCGTG GATGGACGAGTTTCATAAGCTTCCTTACATCTCACCATACGAGGACTCTCGACGGATTGACCCTGAGAGCGAGCTGATGGAGAAGAGAGTCGTTGGCGTC CTGCACGAGCTCTTGAGCTTGACGATCCACAAGAAGACCAAAAGGAACTACCTTAGGTGCCTGAGAGAGGAACTCATCCTGCCACATAAGTTCACGAGGC TATTCACGAGGTACCCGGGGATATTCTACCTGTCTTTGAAATGTAAAACTACCACAGTCGCGCTCAGAGAAGGCTACAGAAAGGGGAAACTTGTCAACCC GCATCCTCTGGCTCGTCTAAGGGAGAAAGTCTATCACGTGATGCGAACCGGAGTTCTTTACCGCGGCAAAGGTGCTAGCATGGTTCCTCCGGAGATGCTG ATGAACGATGCAGGCGACGAAGAATCCGGGCAAGAAGAAGAGTCCGAGGACGACGATGGGTCTTGCTATGACGAAATGTCCGATGATGAATGTGAAGACG ACCGACATTGA
AA sequence Show only first row Show all	>Lus10015979 pacid=23154405 polypeptide=Lus10015979 locus=Lus10015979.g ID=Lus10015979.BGIv1.0 annot-version=v1.0 MISRTRHQSIRHLLLLCRASSPESTNNSVAVLHRSHFLNQQHRSITKVRLKWVKNRSIDHIIDVETDLKAASLLKDAIKRSPTGFLTAQSFADWQKLLGL TVPVLRFLRRYPTLFEEFPHARYANLPCFRLTKTAQLLDSQEQDIHQAHESKTVERLARVLMMMKTRTVPIQSLHPLKWDLGLPDHFERTLVPKYPDHFR VLKATNGIGCLQLADWKDEYAVSELLRSHESKETGDEYRPFKRGQAALAFPMSFPRGYGGQKKVRAWMDEFHKLPYISPYEDSRRIDPESELMEKRVVGV LHELLSLTIHKKTKRNYLRCLREELILPHKFTRLFTRYPGIFYLSLKCKTTTVALREGYRKGKLVNPHPLARLREKVYHVMRTGVLYRGKGASMVPPEML MNDAGDEESGQEEESEDDDGSCYDEMSDDECEDDRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58520			Ubiquitin carboxyl-terminal hy...		Lus10015979 [exp]	0	1
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	8.1	0.8373
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	9.5	0.8408
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	10.7	0.8285
AT3G15080			Polynucleotidyl transferase, r...		Lus10000997 [exp]	14.4	0.8042
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	15.3	0.8245
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	15.7	0.8205
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10020149 [exp]	17.7	0.8270
AT3G19540			Protein of unknown function (D...		Lus10018707 [exp]	21.2	0.8144
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10035050 [exp]	22.8	0.7853
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	24.8	0.8105

Compare expression of checked genes

Lus10015979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.