Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58530 443 / 2e-156 RNI-like superfamily protein (.1) AT5G23340 102 / 3e-24 RNI-like superfamily protein (.1) AT4G15475 94 / 8e-21 F-box/RNI-like superfamily protein (.1) AT5G01720 90 / 2e-19 RNI-like superfamily protein (.1) AT1G21410 85 / 4e-18 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 83 / 2e-17 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT2G25490 81 / 3e-16 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 79 / 9e-16 EBF2 EIN3-binding F box protein 2 (.1) AT5G21900 75 / 1e-14 RNI-like superfamily protein (.1) AT5G27920 72 / 1e-13 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012294 [exp] 628 / 0 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10040998 [exp] 102 / 3e-24 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 100 / 5e-23 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10034013 [exp] 92 / 5e-20 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10012764 [exp] 92 / 7e-20 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10001264 [exp] 88 / 9e-19 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 87 / 3e-18 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10028645 [exp] 85 / 3e-18 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002014 [exp] 86 / 4e-18 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195800 [exp] 492 / 1e-175 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 99 / 9e-23 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 89 / 4e-19 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.018G130800 [exp] 83 / 5e-17 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G105400 [exp] 82 / 1e-16 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G185700 [exp] 80 / 2e-16 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.006G068500 [exp] 80 / 3e-16 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G022600 [exp] 79 / 6e-16 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.002G074700 [exp] 79 / 6e-16 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.016G128400 [exp] 76 / 6e-15 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015980 pacid=23154365 polypeptide=Lus10015980 locus=Lus10015980.g ID=Lus10015980.BGIv1.0 annot-version=v1.0 ATGGAAGAGAAGGCGGCGGAGGGGGAGGTGACGTGGAGTAGGGAGATAGTCCCGAGAGTGATGAAGATTGTCGGTGCAAAGCTTTCTCAGAGAGAGTTGG TTTCGGTTCTCCTCGTCAGCCCTTGGATCCACCGCGCTCTCGTCTCTTACTCTTCTCTCTGGCTTGTACTTAATTTTAGGGAAACTGCACGCGCTGGTGA GCGGCTCGTAGCTGCTCTTGCTTTGCCAAGATATCGTCATTTGAAGCAGATAAATCTGGAGTTTGCTCAAGATGTTGAAGACAGGCATCTTGAAACGGTT CGAGACAAGTTTCATGGAAATCTCCAGAACTTGGAGGCGTTGAACCTCAATGTATGCCAGAAGGTTTCTGATAAGGGAATTGAAGCCATCACTAGCTGTT GCCCTGAACTAAAGATCTTCTCTGTTTATTGGAACGTTAGGGTAACTGATGTTGGTATCAAGCATTTGTTGGAGAACTGCAAACACATATGTGATCTGAA CTTAAGCGGATGCAAGAATTTATCAGATAAAAGCATGCGGTTAATTGCTGACAATTATCCAGAATTACTGTCATTAAATCTCACAAGGTGCGTCAAACTG ACAGACGATGGCTTGCTGCAGATATTACAGAAGTGTTCATTACTGCAGAGCTTAAATCTTTATGCGCTTTCCAGCTTCACAGACAGAGCATTCAAGAGCA TATCTAATGTAGGCAATCTGAGATTTCTGGATTTATGTGGTGCGCAGCATCTATCAGATGAAGGTCTTTCTTGTATAGCGAAGTGCAAAAACATTGTCTC CCTCAATTTGACATGGTGTATACGTGTCACTGACATCGGGGTCATTGCTGTTGCTGAAGGTTGCACCTCTCTGGAGTTCCTCAGTCTGTTCGGAATAATT GGTGTAACTGATAAGTCTCTGGAGGCTCTTTCAAGGTGCTGTTCAAATACACTAACAACACTTGATGTGAATGGATGCGTTGGAATAAAGTTAATTGACG GATTTGTTCTCCGTAGAGGAGGAGCCGCGACGAACTGCTGCAGTTGTTCCCCTACCTCGAGTGTTTCAAAGTTCACAGTTGATTGA
AA sequence Show only first row Show all	>Lus10015980 pacid=23154365 polypeptide=Lus10015980 locus=Lus10015980.g ID=Lus10015980.BGIv1.0 annot-version=v1.0 MEEKAAEGEVTWSREIVPRVMKIVGAKLSQRELVSVLLVSPWIHRALVSYSSLWLVLNFRETARAGERLVAALALPRYRHLKQINLEFAQDVEDRHLETV RDKFHGNLQNLEALNLNVCQKVSDKGIEAITSCCPELKIFSVYWNVRVTDVGIKHLLENCKHICDLNLSGCKNLSDKSMRLIADNYPELLSLNLTRCVKL TDDGLLQILQKCSLLQSLNLYALSSFTDRAFKSISNVGNLRFLDLCGAQHLSDEGLSCIAKCKNIVSLNLTWCIRVTDIGVIAVAEGCTSLEFLSLFGII GVTDKSLEALSRCCSNTLTTLDVNGCVGIKLIDGFVLRRGGAATNCCSCSPTSSVSKFTVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58530			RNI-like superfamily protein (...		Lus10015980 [exp]	0	1
AT2G30320			Pseudouridine synthase family ...		Lus10042233 [exp]	4.5	0.7748
AT1G77800			PHD finger family protein (.1....		Lus10009786 [exp]	6.9	0.8010
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	8.7	0.7996
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	8.8	0.7929
AT2G39580			unknown protein		Lus10005958 [exp]	11.6	0.8064
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10023746 [exp]	11.7	0.8144
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10034921 [exp]	13.0	0.8198
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	15.3	0.7706
AT2G25570			binding (.1.2.3)		Lus10001073 [exp]	17.0	0.7422
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	19.4	0.7791

Compare expression of checked genes

Lus10015980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.