Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58560 789 / 0 DNAse I-like superfamily protein (.1) AT3G58580 779 / 0 DNAse I-like superfamily protein (.1) AT3G18500 133 / 2e-33 DNAse I-like superfamily protein (.1.2.3) AT1G31500 112 / 5e-27 DNAse I-like superfamily protein (.1.2.3.4) AT5G11350 113 / 4e-26 DNAse I-like superfamily protein (.1) AT1G73875 104 / 1e-23 DNAse I-like superfamily protein (.1) AT1G31530 50 / 1e-06 DNAse I-like superfamily protein (.1) AT5G54130 50 / 3e-06 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) AT1G02270 49 / 6e-06 Calcium-binding endonuclease/exonuclease/phosphatase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012293 [exp] 944 / 0 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1) Lus10016206 [exp] 892 / 0 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10029338 [exp] 890 / 0 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10036357 [exp] 122 / 6e-30 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10014775 [exp] 118 / 3e-28 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10013119 [exp] 108 / 1e-24 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10026203 [exp] 105 / 2e-24 AT1G31500 458 / 2e-162 DNAse I-like superfamily protein (.1.2.3.4) Lus10008086 [exp] 105 / 1e-23 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1) Lus10032490 [exp] 102 / 8e-23 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G061700 [exp] 878 / 0 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 873 / 0 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.018G032300 [exp] 108 / 2e-24 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G057100 [exp] 104 / 1e-23 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.003G106000 [exp] 101 / 4e-23 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) Potri.014G108200 [exp] 56 / 4e-08 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.015G004200 [exp] 56 / 5e-08 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.012G007600 [exp] 55 / 1e-07 AT5G54130 721 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 51 / 1e-06 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10015981 pacid=23154363 polypeptide=Lus10015981 locus=Lus10015981.g ID=Lus10015981.BGIv1.0 annot-version=v1.0 ATGGCGGGGATTCAACAGTACCGGATACAAAGTGATAAGAAAGTATCCGTATGTAGTATACATCCATCAGAGCAAGCCACATTGCAGTGTGTAGGCTGCG TCAAGGCGAAAATACCCGTCACGAAAAGTTACCATTGCTCTCCCAAGTGTTTCTCTGATGCCTGGCAGCATCATCGAGTTCTACATGATCGAGCAGCAAG TGCTGCGAGTGAGAATGCGAATGAAGAAGAAGAGTTGTTTGGACGTGCCAATAGCACGGGATCAGGTGTTCTTAATGCTAGTTTATCCAGTTCTGCTTCA ACTGCTAGTTTGACGAATGGATCAACACCTGTTTATCCTGCGATTATGGCACAAAGAAGTGGTGGTGAGACTTGGTTTGAAGTGGGGCGGTCAAAAATAT ATACACCGTCAGCTGATGATATTGCACACGTTCTTAAGTTTGAGTGTGTTGTGGTCGATGCTGAAACTAAACAGACTGTGGGACATCCCAGCACACTTTT GACTTCCCGTGTTATTCCGGCTCCTTCCCCTCCACCACGTCGATTGTTTCCTGTAAGTGGAGTGGATGGGATTAGCCATTTGGATGCTGATGGTCGCATT TCATCTACTGGAACTTTCACTGTTCTCTCATATAACATTTTGGCTGACACCTATGCTACAAATGAGACTTATGCTTACTGCCCCTCATGGGCCCTTTCAT GGGCATATCGCCGACAAAATTTGCTGCGGGAAATAGTTGGATATCGAGCAGACATTGTTTGTCTCCAGGAGGTTCAAAACGATCATTTTGAGGAATTCTT TGCACCGGAGTTGGACAAGCATGGTTATCAAGGCCTGTACAAGAGGAAGACGAATGAGGTTTACAGTGGAAATCCTAATACCATAGATGGTTGTGCAACT TTCTTTCGTAGAGATAGATTTTCGCATGTAAAAAAATATGAGGTTGAATTCAATAAGGCTGCTCAGTCTTTGACTGAAGCCTTGGTTCCTAGTGCTCAGC GAAAAACTGCTTTGAACCGATTAGTTAAGGATAATGTTGCATTAATTGTGGTTTTGGAGGCTAAGTTCAGCAACCAAGGAGCTGATAACCCTGGGAAGCG GCAGCTTCTGTGTGTTGCAAACACCCATGTAAATGTCCACCATGATCTAAAGGATGTTAAACTCTGGCAGGTTCTTACTCTTCTTAAGGGATTAGAGAAA ATAGCTGCAAGTGCTGATATTCCTATGCTAGTTTGCGGAGATTTCAATTCACTGCCTGGAAGTGCTCCTCATGCCCTTCTCGCCATGGGGAAGGTGGATC CATTACATCCTGATTTAGTTATGGACCCTCTTAGTATCTTACGTCCTCACAGCAAACTGACGCATCAGCTACCACTGGTTAGTGCTTACTCATCTTTTGC AAGACTGGGAATGGGTCTTGGCCTGGAGCAACAAAGGAGGAAGCTAGACCCTGCAACCAATGAGCCATTGTTTACTAATTGCACTAGAGACTTTATTGGC ACTCTTGATTACATATTTTACACTGCTGACTCTTTGACGGTGGAATCCTTGTTGGAACTCCTGGATGAGGAAAGTTTGAGAAAAGATACAGCGCTTCCTT CTCCCGAGTGGTCCTCGAATCATACTGCGCTGCTAGCTGAATTTCGTTGCAAACCTAGACTAAGACGTTGA
AA sequence Show only first row Show all	>Lus10015981 pacid=23154363 polypeptide=Lus10015981 locus=Lus10015981.g ID=Lus10015981.BGIv1.0 annot-version=v1.0 MAGIQQYRIQSDKKVSVCSIHPSEQATLQCVGCVKAKIPVTKSYHCSPKCFSDAWQHHRVLHDRAASAASENANEEEELFGRANSTGSGVLNASLSSSAS TASLTNGSTPVYPAIMAQRSGGETWFEVGRSKIYTPSADDIAHVLKFECVVVDAETKQTVGHPSTLLTSRVIPAPSPPPRRLFPVSGVDGISHLDADGRI SSTGTFTVLSYNILADTYATNETYAYCPSWALSWAYRRQNLLREIVGYRADIVCLQEVQNDHFEEFFAPELDKHGYQGLYKRKTNEVYSGNPNTIDGCAT FFRRDRFSHVKKYEVEFNKAAQSLTEALVPSAQRKTALNRLVKDNVALIVVLEAKFSNQGADNPGKRQLLCVANTHVNVHHDLKDVKLWQVLTLLKGLEK IAASADIPMLVCGDFNSLPGSAPHALLAMGKVDPLHPDLVMDPLSILRPHSKLTHQLPLVSAYSSFARLGMGLGLEQQRRKLDPATNEPLFTNCTRDFIG TLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSNHTALLAEFRCKPRLRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	0	1
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10037653 [exp]	3.9	0.8545
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	5.7	0.8765
AT1G10050			glycosyl hydrolase family 10 p...		Lus10011465 [exp]	5.9	0.8528
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10010571 [exp]	8.0	0.8159
AT1G48490			Protein kinase superfamily pro...		Lus10031906 [exp]	8.2	0.8700
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013803 [exp]	8.5	0.8395
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	11.5	0.8536
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	12.4	0.8004
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	14.5	0.8190
AT1G20670			DNA-binding bromodomain-contai...		Lus10013220 [exp]	14.9	0.7522

Compare expression of checked genes

Lus10015981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.