Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56880 107 / 4e-28 VQ motif-containing protein (.1) AT2G41010 87 / 2e-20 ATCAMBP25 calmodulin (CAM)-binding protein of 25 kDa (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012292 [exp] 270 / 4e-92 AT3G56880 125 / 1e-35 VQ motif-containing protein (.1) Lus10029339 [exp] 142 / 9e-41 AT2G41010 101 / 4e-25 calmodulin (CAM)-binding protein of 25 kDa (.1) Lus10016205 [exp] 134 / 4e-38 AT2G41010 99 / 5e-25 calmodulin (CAM)-binding protein of 25 kDa (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029600 [exp] 130 / 8e-37 AT3G56880 125 / 4e-35 VQ motif-containing protein (.1) Potri.006G032300 [exp] 122 / 8e-34 AT3G56880 127 / 1e-35 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10015982 pacid=23154422 polypeptide=Lus10015982 locus=Lus10015982.g ID=Lus10015982.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCATCGGAGAATCTCTCACTCTTCGACTCCTGGACATTCCGCCCATCCTTCCCCGACTCATGGATCTCCGAATCTTACTCTCGCGACTCCG ATGCCCTCACCAAAGCCCTCCAACAATCCCTCTACTCCTCCAACACTGCTGATCCCTTCATTAACTCTTCTTCCAATCCAATCCTCTCTTCCAATTTCAT CACCAGCAGTCCAGACACTCCCACTCCCATCTGCTCCTCCGACCCGGACAGCACGGCCCAACCCGCTGCCCCGGCTCCCGCCGCCCCGACAACCAAACCC GGCCGCAACAACCGCTCCGGACCCGGCGGCGCTACAGGGAAGGTCTCGAAGCGGAAGCCACGGGCTTCATCCAAGAAGAGTCAGACGACCTTCATCACAG CGGATCCGGCTAATTTCCGGCAGATGGTGCAGCAGGTCACCGGTGGAGTACGGTTCACCGACAACTTGGTCCCGGTACTGAAGCCGGAGCCTCACCGGAT TGGTGCTGTGAGCAGGTTGATTCACCACCACCATGTCGAACAGGCTACTACTGCAGTAGGAAGAGGAGGACTGCCGACGCTGGACACGTCGTCGTTTCTG CTCGACCATCAGGGGGGTGATAAAACGACGGCGTTTAATAACGGTGGCCCGCTCCCTTATTCGCAGCCGATGGATTTTGACGGATTCTCAAGCTTCCCGA CGCTGGAGTCGTGGAAAGTCATTTAG
AA sequence Show only first row Show all	>Lus10015982 pacid=23154422 polypeptide=Lus10015982 locus=Lus10015982.g ID=Lus10015982.BGIv1.0 annot-version=v1.0 MASSSENLSLFDSWTFRPSFPDSWISESYSRDSDALTKALQQSLYSSNTADPFINSSSNPILSSNFITSSPDTPTPICSSDPDSTAQPAAPAPAAPTTKP GRNNRSGPGGATGKVSKRKPRASSKKSQTTFITADPANFRQMVQQVTGGVRFTDNLVPVLKPEPHRIGAVSRLIHHHHVEQATTAVGRGGLPTLDTSSFL LDHQGGDKTTAFNNGGPLPYSQPMDFDGFSSFPTLESWKVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56880			VQ motif-containing protein (....		Lus10015982 [exp]	0	1
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10041838 [exp]	2.4	0.9067
AT5G01750			Protein of unknown function (D...		Lus10002477 [exp]	3.0	0.8990
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	3.5	0.9045
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10031500 [exp]	4.1	0.9067
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10007540 [exp]	4.2	0.9054
AT3G62260			Protein phosphatase 2C family ...		Lus10038058 [exp]	4.5	0.8966
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	9.5	0.8806
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	11.3	0.8791
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	14.0	0.8846
AT2G02870			Galactose oxidase/kelch repeat...		Lus10037196 [exp]	14.3	0.9025

Compare expression of checked genes

Lus10015982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.