Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38920 353 / 2e-121 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related AT1G02860 208 / 7e-65 BAH1, NLA nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT3G27330 47 / 2e-05 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G18660 45 / 6e-05 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012290 [exp] 602 / 0 AT2G38920 392 / 5e-137 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10030375 [exp] 188 / 4e-57 AT1G02860 386 / 1e-134 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10007867 [exp] 116 / 2e-31 AT1G02860 199 / 3e-64 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10032119 [exp] 47 / 2e-05 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10022324 [exp] 46 / 3e-05 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G198600 [exp] 429 / 9e-152 AT2G38920 390 / 3e-136 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.016G064600 [exp] 429 / 2e-151 AT2G38920 414 / 2e-145 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.014G130300 [exp] 221 / 5e-70 AT1G02860 448 / 3e-159 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.002G205400 [exp] 219 / 2e-69 AT1G02860 437 / 5e-155 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.001G336832 [exp] 48 / 6e-06 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G178700 [exp] 45 / 4e-05 AT3G24800 269 / 9e-86 proteolysis 1 (.1) Potri.001G229600 [exp] 41 / 0.001 AT2G44410 191 / 6e-56 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Lus10015986 pacid=23154396 polypeptide=Lus10015986 locus=Lus10015986.g ID=Lus10015986.BGIv1.0 annot-version=v1.0 ATGAAATTCGGAGAGACGTTCCGTGAGTACCTTCGCGGAGACCAGGAGAAATTCCTGGACAAATGCTCGCACGTAGAGTACAAGCGGCTGAAGAAGGTGC TGAAGAGATGCCGGGTTTCTCACGGCTCTCAGGATCAACAAGGCGAGGAGGAACATGAAGATAATAGCCCCGGTTGCGGCCGATTCTGCAATTGTCAATC CTGTCCAGTGTGCGATCAGATGTTCTTTTCTGAATTGATGAAAGAAGCGTCCAATATAGCTGGATGCTTCAGCTCAAGAGCTAGGCGTCTCCTCCACCTT CACATGGCGAGAGGAATGCAAGGCTATGTGCTTAGGGTTCGTCAATGTTTTCGAGATGATAAGTTAGCAATGGCCGAAGAAGGCCGGATGTTGATGGAGT ATGTTACCATGAATGCTATTGCAATACGGAAAATCTTGAAGAAGTATGATAAGGTGCATAGCTCTGTGAATGGGAATATTTTCAAATCCAAGATGCGTGC GGAGCATATTGAGCTACTGCAGTCGCCTTGGCTGATCGAGCTCGGAGCGTTGCTGTTGAACTTCAACGGGTTGAATGGAGGACGATTCAGCGAGTTCTGT GGCCATTTCTCTTGTGATCTCGATGCATCTGAGCCTGTAATGAAGCTTACTTTACCGAATTCGGTCATGATAGAATACAGCTTGACCTGTGCTATTTGCT TGGAAATGGTATTTAATCCATATGCTTTGAGTTGCGGTCACCTTTTCTGCAAATCCTGTGCTTGCTCGGCTGCTTTCGTACCAATATTCCTCGGTCTTAA AGAAGCAACTCCAGATTCAAAGTGCTCAGTCTGCAGAGAGGTTGGTGTGTACCAAAACGCAGTGCCGATGACGGAATTGGACTTGCTGCTGAAAAGAAGG TGCAGAGAGAACTGGAAAGAAAGGATGGCAGCTGAACGGGTGTTGATAGTTAAGCAAACGAAAGAGTACTGGGATATGCAGACCAAATATGCTATTGGGT ACTGA
AA sequence Show only first row Show all	>Lus10015986 pacid=23154396 polypeptide=Lus10015986 locus=Lus10015986.g ID=Lus10015986.BGIv1.0 annot-version=v1.0 MKFGETFREYLRGDQEKFLDKCSHVEYKRLKKVLKRCRVSHGSQDQQGEEEHEDNSPGCGRFCNCQSCPVCDQMFFSELMKEASNIAGCFSSRARRLLHL HMARGMQGYVLRVRQCFRDDKLAMAEEGRMLMEYVTMNAIAIRKILKKYDKVHSSVNGNIFKSKMRAEHIELLQSPWLIELGALLLNFNGLNGGRFSEFC GHFSCDLDASEPVMKLTLPNSVMIEYSLTCAICLEMVFNPYALSCGHLFCKSCACSAAFVPIFLGLKEATPDSKCSVCREVGVYQNAVPMTELDLLLKRR CRENWKERMAAERVLIVKQTKEYWDMQTKYAIGY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Lus10015986 [exp]	0	1
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	6.1	0.7905
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	13.6	0.7571
					Lus10019815 [exp]	28.3	0.7417
AT1G09920			TRAF-type zinc finger-related ...		Lus10042917 [exp]	34.6	0.7560
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10041760 [exp]	37.1	0.6819
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10042281 [exp]	47.8	0.7512
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	53.4	0.7020
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10003388 [exp]	72.6	0.6949
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003093 [exp]	104.8	0.6989
					Lus10013906 [exp]	116.1	0.7020

Compare expression of checked genes

Lus10015986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.