Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06580 774 / 0 FAD-linked oxidases family protein (.1) AT4G36400 141 / 7e-36 D2HGDH D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) AT5G21482 50 / 3e-06 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT5G44390 46 / 6e-05 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012289 [exp] 1014 / 0 AT5G06580 825 / 0.0 FAD-linked oxidases family protein (.1) Lus10028342 [exp] 158 / 2e-41 AT4G36400 788 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Lus10041792 [exp] 132 / 1e-32 AT4G36400 682 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Lus10024289 [exp] 50 / 3e-06 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10016363 [exp] 45 / 0.0001 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10003845 [exp] 44 / 0.0002 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10031046 [exp] 43 / 0.0005 AT2G41510 423 / 1e-144 cytokinin oxidase/dehydrogenase 1 (.1) Lus10035433 [exp] 43 / 0.0005 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1) Lus10026471 [exp] 43 / 0.0006 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G064800 [exp] 830 / 0 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1) Potri.007G018600 [exp] 160 / 9e-43 AT4G36400 817 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Potri.002G178300 [exp] 51 / 2e-06 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.016G040300 [exp] 47 / 2e-05 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.001G462800 [exp] 45 / 9e-05 AT1G30760 659 / 0.0 FAD-binding Berberine family protein (.1) Potri.002G178400 [exp] 45 / 0.0002 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.006G128900 [exp] 44 / 0.0004 AT1G30760 638 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158700 [exp] 44 / 0.0004 AT1G30760 664 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G463300 [exp] 42 / 0.001 AT1G30760 622 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF02913 [flax] [poplar] FAD-oxidase_C FAD linked oxidases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015987 pacid=23154399 polypeptide=Lus10015987 locus=Lus10015987.g ID=Lus10015987.BGIv1.0 annot-version=v1.0 ATGGTTCTCTACCAGTGGCTCTCCCGCTTCCGCGCCACTTCTCGAAATGCCTTCTCAACTCTCCGCACTTCCCCTACTCCCTTCTTCCGACCTCAGCCCA ATCCCCCAGCCGCCTTCCGCCACTCTCCACACTCCGGCGATAGCGGGAAACCGTATTCCTTATTGTGGTCAACATCTTTGCTTCCGTTGACCGTTGGTCT GGTCTCTGTTGCTTGTATTTCTGCTCAGCCTCAGCCTTCCCTCTGTGATCGCGCCTCCAATCTCGATGACAGTCCTCGCATCGGAGGCAAGGATAGCACC GAATTCGTGGTTAAAGGCTCGCACAAGCAGGTTCCCCAACAGCTCCTTGACGAGTTAGGAGCTATCTGTCAGGATAACATGACATTAGACTTTGATGAAA GGTCCGAGGAGGAAGTGTCTGAAATTGTCAAAGCTTGTAACAAGCACAAGATACCAATTGTGCCATATGGTGGTGCTACATCGATAGAGGGACACACTTT GTCACCTCATGGTGGTGTTTGTGTTGACTTGTCATATATGAAGAAAGTTAAAGCCTTACATGTTGAGGATATGGATTGCGTTGTTGAGCCTGGGATTGGC TGGATGGAACTTAACGAGTACCTAGAGCCTTATGGTCTATTTTATCCACTTGATCCTGGTCCTGGTGCAACAATCGGGGGAATGTGCGCAACACGTTGCT CTGGTTCTCTGGCAGCAAGGTATGGGACTATGAGAGATAATGTCATCAACCTCAAGGTAGTTCTTGCCAATGGAGAAGTGGTGAAGACAGCTTCGCGTGC TCGTAAAAGTGCTGCAGGGTATGACTTGACCCGCTTGGTAATTGGAAGCGAAGGAACCCTTGGCATAGTAACAGAGGTCACTCTTCGACTTCAGAAAATT CCACTGCATTCAGTGGTAGCTATGTGCAACTTTCCTACAGTTAAGGATGCAGCAGATGTCGCCATTGCTACCATGCAAACTGGAATTCAGGTATCCAGGG TGGAGCTACTTGATGAGGTACAGGTCAAAGCTGTCAATATTGCTAATGGAAAAAGTTTACCTGAGCTCCCTACTCTGATGTTTGAATTCACAGGCACAGA GGCTTATGCACACGAGCAAACTCTGATTGTTCAGAAGATTGTTTCTGATTACAATGGTTCTGATTTTGTCTTTGCCAAAGACCCCGAGGCTAAGAAAGAA CTGTGGAAGATAAGGAAGGAAGCTCTATGGGCTTGCTTTGCCATGGAACCCAACTTTGAAGCGATGATTACGGATGTATGTGTTCCTTTATCAAAGCTTG GAGAGTTGATCTCGAAATCGAAAGAGGAGTTGGACGCTTCAGAACTCATCTGCACGGTGATTGCCCATGCTGGTGACGGAAACTTCCATACCGTGATTCT TTTCGATCCTAATGTGGAAGAGCAAAGAAAGGAGGCAGAGAGATTGAACAATATCATGGTCCAATCTGCTTTGTCAATGGAAGGAACATGCACTGGTGAG CACGGAGTTGGGACGGGGAAAACGAAGTATCTGGAGAAGGAATTGGGGATTGAAAACTTGAGGACGATGAAGAAGATCAAAGACGCTTTAGATCCCAACA ACATCATGAACCCAGGAAAACTAATTCCACCCCATGTTTGTTTCTGA
AA sequence Show only first row Show all	>Lus10015987 pacid=23154399 polypeptide=Lus10015987 locus=Lus10015987.g ID=Lus10015987.BGIv1.0 annot-version=v1.0 MVLYQWLSRFRATSRNAFSTLRTSPTPFFRPQPNPPAAFRHSPHSGDSGKPYSLLWSTSLLPLTVGLVSVACISAQPQPSLCDRASNLDDSPRIGGKDST EFVVKGSHKQVPQQLLDELGAICQDNMTLDFDERSEEEVSEIVKACNKHKIPIVPYGGATSIEGHTLSPHGGVCVDLSYMKKVKALHVEDMDCVVEPGIG WMELNEYLEPYGLFYPLDPGPGATIGGMCATRCSGSLAARYGTMRDNVINLKVVLANGEVVKTASRARKSAAGYDLTRLVIGSEGTLGIVTEVTLRLQKI PLHSVVAMCNFPTVKDAADVAIATMQTGIQVSRVELLDEVQVKAVNIANGKSLPELPTLMFEFTGTEAYAHEQTLIVQKIVSDYNGSDFVFAKDPEAKKE LWKIRKEALWACFAMEPNFEAMITDVCVPLSKLGELISKSKEELDASELICTVIAHAGDGNFHTVILFDPNVEEQRKEAERLNNIMVQSALSMEGTCTGE HGVGTGKTKYLEKELGIENLRTMKKIKDALDPNNIMNPGKLIPPHVCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06580			FAD-linked oxidases family pro...		Lus10015987 [exp]	0	1
AT2G39130			Transmembrane amino acid trans...		Lus10038702 [exp]	3.9	0.9076
AT1G48900			Signal recognition particle, S...		Lus10016213 [exp]	4.0	0.9209
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10014368 [exp]	4.2	0.9157
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031696 [exp]	4.5	0.9353
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10015027 [exp]	10.8	0.8993
AT3G21710			unknown protein		Lus10027176 [exp]	13.3	0.9110
AT2G27430			ARM repeat superfamily protein...		Lus10013918 [exp]	14.0	0.8873
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10002026 [exp]	14.4	0.9010
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10038531 [exp]	19.4	0.9046
AT1G47870	E2F_DP	ATE2FC, ATE2F2,...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10033151 [exp]	20.0	0.8987

Compare expression of checked genes

Lus10015987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.