Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06570 346 / 4e-119 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G16080 179 / 2e-53 ATCXE17 carboxyesterase 17 (.1) AT3G63010 169 / 7e-50 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 166 / 6e-49 alpha/beta-Hydrolases superfamily protein (.1) AT2G45600 163 / 1e-47 alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 160 / 1e-46 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 155 / 6e-45 alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 152 / 3e-43 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G48690 150 / 6e-43 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 150 / 1e-42 ATCXE20 carboxyesterase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015989 [exp] 435 / 3e-154 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10029341 [exp] 340 / 1e-116 AT5G06570 293 / 5e-98 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036168 [exp] 334 / 1e-114 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10016204 [exp] 311 / 4e-106 AT5G06570 260 / 7e-86 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 303 / 5e-102 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 305 / 1e-93 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013376 [exp] 262 / 3e-86 AT5G06570 256 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024087 [exp] 188 / 4e-57 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10017587 [exp] 175 / 5e-52 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065000 [exp] 437 / 6e-155 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G198800 [exp] 435 / 3e-154 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G155800 [exp] 344 / 3e-118 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G101400 [exp] 195 / 7e-60 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.010G127600 [exp] 191 / 2e-58 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.001G032400 [exp] 187 / 9e-57 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192650 [exp] 185 / 4e-56 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.008G118400 [exp] 183 / 3e-55 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G113700 [exp] 183 / 4e-55 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.003G192600 [exp] 182 / 8e-55 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10015988 pacid=23154407 polypeptide=Lus10015988 locus=Lus10015988.g ID=Lus10015988.BGIv1.0 annot-version=v1.0 ATGGGTTCACTTCCTCAAGTAGTGGAAGATTGCAATGGACTTCTCCAACTATTCAGCGACGGCGCCGTTTTTCGTCTCAAAGACATCGACTTCCCTTTCC CGCCACTCCACGACCAATCCGTCATCTACAAGGACTGCCTCTTCCACAAACCCCACAACCTCCACCTCCGCCTCTACAAGCCCATCCACACCGTCAGCCG TCGTCGTCGCCGTCCCCTCCTTTTCTACTTCCACGCCGGCGGCTTCTGCCTCGGGTCCCGCCAGTGGCCCAACTTCCACGCCTCCTGCCAGCGCCTATCT TCCTCTCTAGACGCCGTCGTTGTTGCCCCCGACTACCGCCTGGCACCGGAGCACCGGCTGCCAGCGGCCATGGACGATGGATACGACGCCGTGAAGTGGC TGCAGTCTCAGGCCGAGAAAAATGACGACGGTGCTCGTGATGACTGGTTAGGTGACAAGGACGTTGACTTTGACCGGGTGTTCATGCTTGGTGACTCGTC CGGGGGAAATATTGTCCACCACTTGGCGGTTCGACTCGGAAAAGGTTCGCCCGGTTTGGGCCGGGTTCGGGTCCGGGGTTATATCTTGTTGTCGCCGTTT TTCGGAGGGGTTTCGAGGACCGTGTCGGAGGAAGGACCGGCCGAGGAGCTGCTGAGTTTGGAGGATATGGATAGATTTTGGAGGCTAGCTTTGCCCATTG GAGAAGATAGGGACCACGAAATGGCGAATCCATTCGGACCCAGCAACGCCAAGCTTAAAATGTTCGAGATGGATCCGATGCTCGTGATCGTCGGAGGCTG CGAGCTTTTAAGAGATCGACTCCACGACTATGCTACGAGGTTGAAAAAGATGGGGGGAAAAGTTGAGTACGTGGAGATGAAAGGAAAACAACATGGTTTC TTCACCAATGACTCTTATTCCCAAAACTCACATCATCTCGTTCATATGCTCAATCGTTTCATAATTCACAACTCGATCTAG
AA sequence Show only first row Show all	>Lus10015988 pacid=23154407 polypeptide=Lus10015988 locus=Lus10015988.g ID=Lus10015988.BGIv1.0 annot-version=v1.0 MGSLPQVVEDCNGLLQLFSDGAVFRLKDIDFPFPPLHDQSVIYKDCLFHKPHNLHLRLYKPIHTVSRRRRRPLLFYFHAGGFCLGSRQWPNFHASCQRLS SSLDAVVVAPDYRLAPEHRLPAAMDDGYDAVKWLQSQAEKNDDGARDDWLGDKDVDFDRVFMLGDSSGGNIVHHLAVRLGKGSPGLGRVRVRGYILLSPF FGGVSRTVSEEGPAEELLSLEDMDRFWRLALPIGEDRDHEMANPFGPSNAKLKMFEMDPMLVIVGGCELLRDRLHDYATRLKKMGGKVEYVEMKGKQHGF FTNDSYSQNSHHLVHMLNRFIIHNSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10015988 [exp]	0	1
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Lus10023673 [exp]	4.6	0.9230
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10010453 [exp]	4.7	0.9453
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Lus10011750 [exp]	4.9	0.9027
AT4G12010			Disease resistance protein (TI...		Lus10018021 [exp]	5.4	0.8800
					Lus10000363 [exp]	6.8	0.9444
					Lus10003285 [exp]	8.3	0.9444
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10041558 [exp]	9.6	0.9444
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	10.7	0.9444
AT1G75580			SAUR-like auxin-responsive pro...		Lus10034511 [exp]	11.0	0.8654
AT1G20480			AMP-dependent synthetase and l...		Lus10011621 [exp]	11.7	0.9444

Compare expression of checked genes

Lus10015988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.