Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06570 338 / 7e-116 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G45600 162 / 2e-47 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 150 / 1e-42 ATCXE17 carboxyesterase 17 (.1) AT5G62180 148 / 6e-42 ATCXE20 carboxyesterase 20 (.1) AT3G63010 143 / 7e-40 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 140 / 5e-39 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 137 / 6e-38 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 132 / 4e-36 alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 132 / 1e-35 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 130 / 2e-35 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015988 [exp] 413 / 1e-145 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036168 [exp] 325 / 5e-111 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10029341 [exp] 318 / 3e-108 AT5G06570 293 / 5e-98 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10016204 [exp] 306 / 8e-104 AT5G06570 260 / 7e-86 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 304 / 1e-102 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013376 [exp] 276 / 4e-92 AT5G06570 256 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 293 / 2e-89 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024087 [exp] 177 / 6e-53 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10041632 [exp] 152 / 2e-43 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G198800 [exp] 427 / 4e-151 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G065000 [exp] 427 / 4e-151 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G155800 [exp] 327 / 1e-111 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G031500 [exp] 181 / 2e-54 AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G032400 [exp] 177 / 4e-53 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192650 [exp] 176 / 2e-52 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.004G101400 [exp] 174 / 6e-52 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.003G192600 [exp] 171 / 8e-51 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G127600 [exp] 170 / 4e-50 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.017G113700 [exp] 166 / 2e-48 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10015989 pacid=23154390 polypeptide=Lus10015989 locus=Lus10015989.g ID=Lus10015989.BGIv1.0 annot-version=v1.0 ATGGATTCGCCGTCCCGAATAGTGGAAGACTGCGGCGGAGTTGTCCAACTCTTTAGCGACGGCACAGTTTTCCGCCTCAAGCACATCGACTTCAACATGC CTGTCGTTAACGACCAATCCGTCCTCCACAAGGACTGCCTCTTCGACGAAGCTTGCAACCTCCGCCTCCGTCTCTACAAACACACCGTCGATTCGACGGT TGAGAAGTTTCCGATCCTTTTCTTCTTCCACGGTGGAGGGTTCGTGGTGGGGTCCCGTGACTGGCCCAACTTTCACAATACGTGCCAGCGCCTGGCAGCT GGGCTCCAGGCGGTAGTCATCGCGCCAGACTACCGCCTAGCGCCTGAACATAGGCTCCCGGCCGCTATGGATGACAGTTTGCCGGCCGTGAAGTGGCTAC AAGCACAAGCTCTAAATGCAGGAGATGAGTGGCTGGCCGATGGGGTTGACTTTGACCGGGTTTACGTGATGGGTGACTCGTCCGGTGGGAACATTGTGCA CCATTTGGCAGTTCGACTCGGAGCCGGTACGTCCGATATGGGACCGGTTCGAGTACGGGGTTATGTATTGTTGGCGCCATTTTTCAGCGGGCTAGAGAGG ACTGAATCGGAGGAAGGGCCTAGCGAGAAATTGTTGAGCCTAGAGATTCTCGACAGGTTTTGGAGGCTGTGTCTGCCGGCGGGGGAAACAAGAGACCACC CGGCGTCGAATCCATTTGGGCCCGGAAGCCCAAAACTGGAGGAGAAGGCTATGGGCCCAATGCTGGTGATAGTCGGCGGCTGCGAGCTGTTGAGGGACAG AGTTCACGACTACGCTACGAGGCTGAGAGAGATGGGGAAGAAAGTTGAGTATGTGGAGATCGGAGGAAAGCAACATGGATTCTTCACCGACGACTCTTAT TCAGATGAGTCTGAAGATTTCATTGGACTTCTCAGGAGGTTTATGTTGGAGAATAGTAATGATCTGGCAATGTAA
AA sequence Show only first row Show all	>Lus10015989 pacid=23154390 polypeptide=Lus10015989 locus=Lus10015989.g ID=Lus10015989.BGIv1.0 annot-version=v1.0 MDSPSRIVEDCGGVVQLFSDGTVFRLKHIDFNMPVVNDQSVLHKDCLFDEACNLRLRLYKHTVDSTVEKFPILFFFHGGGFVVGSRDWPNFHNTCQRLAA GLQAVVIAPDYRLAPEHRLPAAMDDSLPAVKWLQAQALNAGDEWLADGVDFDRVYVMGDSSGGNIVHHLAVRLGAGTSDMGPVRVRGYVLLAPFFSGLER TESEEGPSEKLLSLEILDRFWRLCLPAGETRDHPASNPFGPGSPKLEEKAMGPMLVIVGGCELLRDRVHDYATRLREMGKKVEYVEIGGKQHGFFTDDSY SDESEDFIGLLRRFMLENSNDLAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10015989 [exp]	0	1
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	4.7	0.7435
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	6.6	0.7435
					Lus10035508 [exp]	8.1	0.7435
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10038956 [exp]	9.4	0.7435
					Lus10012269 [exp]	10.5	0.7435
AT5G04347			Plant self-incompatibility pro...		Lus10029375 [exp]	11.5	0.7435
AT5G48540			receptor-like protein kinase-r...		Lus10030777 [exp]	12.4	0.7435
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	13.3	0.7435
					Lus10011766 [exp]	14.1	0.7333
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10006147 [exp]	14.4	0.7383

Compare expression of checked genes

Lus10015989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.