Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06560 438 / 2e-150 Protein of unknown function, DUF593 (.1) AT3G11850 346 / 1e-114 Protein of unknown function, DUF593 (.1.2) AT3G54740 293 / 8e-95 Protein of unknown function, DUF593 (.1.2) AT5G57830 87 / 2e-18 Protein of unknown function, DUF593 (.1) AT5G16720 79 / 1e-15 Protein of unknown function, DUF593 (.1) AT4G30830 73 / 9e-14 Protein of unknown function, DUF593 (.1) AT2G24140 68 / 2e-12 Protein of unknown function, DUF593 (.1) AT4G13630 61 / 7e-10 Protein of unknown function, DUF593 (.1.2) AT1G70750 60 / 3e-09 Protein of unknown function, DUF593 (.1) AT1G08800 60 / 3e-09 Protein of unknown function, DUF593 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012288 [exp] 870 / 0 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1) Lus10016203 [exp] 530 / 0 AT5G06560 475 / 2e-164 Protein of unknown function, DUF593 (.1) Lus10029342 [exp] 527 / 0 AT5G06560 473 / 4e-163 Protein of unknown function, DUF593 (.1) Lus10036599 [exp] 99 / 1e-22 AT4G30830 179 / 2e-52 Protein of unknown function, DUF593 (.1) Lus10035817 [exp] 89 / 7e-19 AT4G30830 175 / 4e-51 Protein of unknown function, DUF593 (.1) Lus10010774 [exp] 86 / 1e-17 AT5G57830 145 / 8e-40 Protein of unknown function, DUF593 (.1) Lus10022171 [exp] 83 / 8e-17 AT5G57830 141 / 3e-38 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 76 / 4e-14 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10016673 [exp] 71 / 6e-13 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065200 [exp] 498 / 1e-173 AT5G06560 517 / 4e-180 Protein of unknown function, DUF593 (.1) Potri.006G199000 [exp] 477 / 2e-165 AT5G06560 523 / 0.0 Protein of unknown function, DUF593 (.1) Potri.018G103500 [exp] 97 / 2e-21 AT5G57830 169 / 5e-48 Protein of unknown function, DUF593 (.1) Potri.006G181300 [exp] 96 / 3e-21 AT5G57830 162 / 3e-45 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 65 / 5e-11 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.015G068400 [exp] 58 / 8e-09 AT1G74830 340 / 1e-111 Protein of unknown function, DUF593 (.1) Potri.017G055100 [exp] 57 / 2e-08 AT4G13630 211 / 2e-59 Protein of unknown function, DUF593 (.1.2) Potri.005G220600 [exp] 57 / 3e-08 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.002G242900 [exp] 56 / 4e-08 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) Potri.017G129200 [exp] 55 / 8e-08 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10015990 pacid=23154377 polypeptide=Lus10015990 locus=Lus10015990.g ID=Lus10015990.BGIv1.0 annot-version=v1.0 ATGGATTCTGTACCATTTGCTCCACCTTCTCTGGATGTGGGGAAATGCTGCGACTGTGAGTGTAGAACTTGTTCACCTTCCTGGATACGTACAGTGAAGA GGAAATACGATGAATCCGAGAGGCCCTTTGTTATACCAGGGCTCGATATTGGCTCGAATCCGCGAGTCCAAATTGAGAATGAACTTGCTGCCCTGCGAGA GACTGTCAGTAGCCAACAGCAAGCGATCCAGGATTTGTATGCCGAATTGGAAGAGGAGAGGAATGCTGCTTCGTCAGCTGCGAATGAGGCTATGTCTATG ATACTGAGGCTGCAGAGGGAGAAGGCCGAGGTTCAAATGGAGGCTAGGCAGTTTAAGCGGTTTGCTGAGGAGAAGATGGCTCACGATCAAGAAGAGCTCG TGGCGTTGGATGATGTGTTGTATAAGCGAGAGCAGGCGATTCAGTCTCTTAGTTGCGAAGTTCAAGCTTACAAGCATAGGATGATGAGCTATGGGGTTAC TGAGGCTGAGGTGGAGGAGGGTGGATTTGACCGAGTCAACCATAGTTTGTCGGATTTTGATTTTCCGGAGTTTGATTACCCTCAGCTGAAATGCCATCCG AATGAAAACCGAGCTGCTGATGATGAAGTTGTGGATGTTCGGAGTGAAACGCCTCAATATGGTGTAGTCCATCCTCGCCATGGTGAAACTCATTTGAAGA ATCTCGAATACCGAATCCAACAGATGGAGAAATCGCCCAGCGGGAGTCAATTAGATGTTGATGATTCCAGTGGGAAGCATTTTTTCGAGAAGGTTGTAGT TCGTCAGTCTCCAAGGAAGGCAGATTACGTTACACACCCTGAAGAGCACAAGTTCTATGGAAAGGCTCATAAAAAAGCTGCCGAATTGGAGGATGAGATC GATGACAGAGTTTATACCATAGATGCTGTTCATAACAGTTCGACAGATCGTAAGGTTTCTAGTGATGATGATTATGTTTCCACTCCAAGGACAGGAATGT CTGATCATCAGCCTGACCTGAGTGATCCTGATATCAAGAAACTATATACACGGCTTCATGCTCTCGAGGCTGACAGGGAATCTATGAGGCAGGCTATTAT CTCGATGCGTACTGATAAGGCGCAGCTGGTACTGCTTAAAGAAATTGCTCAGCAGCTGTGCAAGGACATCACACCTGAACGTAGAATTCCTATGAAGAAG CCTTCCATTGTTGGAAGTTTCAAGTTCATCTCAGTTTTCAAGTGGGTCACATCCTTTGTTTTCTGGAGGAAAAAAGCTCGCCAAACTCGGTACATGTTTG GTGCTAAAACTGACAGCGATGGCTTGCTGATGCTATTGAACAAAGACACACGAGCAAGACAGCAGTGGAGATTTCTGTCCAGAACCCACCTTTGA
AA sequence Show only first row Show all	>Lus10015990 pacid=23154377 polypeptide=Lus10015990 locus=Lus10015990.g ID=Lus10015990.BGIv1.0 annot-version=v1.0 MDSVPFAPPSLDVGKCCDCECRTCSPSWIRTVKRKYDESERPFVIPGLDIGSNPRVQIENELAALRETVSSQQQAIQDLYAELEEERNAASSAANEAMSM ILRLQREKAEVQMEARQFKRFAEEKMAHDQEELVALDDVLYKREQAIQSLSCEVQAYKHRMMSYGVTEAEVEEGGFDRVNHSLSDFDFPEFDYPQLKCHP NENRAADDEVVDVRSETPQYGVVHPRHGETHLKNLEYRIQQMEKSPSGSQLDVDDSSGKHFFEKVVVRQSPRKADYVTHPEEHKFYGKAHKKAAELEDEI DDRVYTIDAVHNSSTDRKVSSDDDYVSTPRTGMSDHQPDLSDPDIKKLYTRLHALEADRESMRQAIISMRTDKAQLVLLKEIAQQLCKDITPERRIPMKK PSIVGSFKFISVFKWVTSFVFWRKKARQTRYMFGAKTDSDGLLMLLNKDTRARQQWRFLSRTHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06560			Protein of unknown function, D...		Lus10015990 [exp]	0	1
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10006378 [exp]	5.3	0.8190
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Lus10013348 [exp]	6.2	0.7867
AT1G15680			F-box family protein (.1)		Lus10007302 [exp]	10.1	0.8161
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	11.2	0.8196
AT1G13940			Plant protein of unknown funct...		Lus10030419 [exp]	13.6	0.8126
AT4G32350			Regulator of Vps4 activity in ...		Lus10023635 [exp]	14.2	0.7997
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10042973 [exp]	19.4	0.8018
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	26.7	0.7604
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Lus10031825 [exp]	27.1	0.7928
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10026018 [exp]	27.3	0.7981

Compare expression of checked genes

Lus10015990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.