Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54750 461 / 1e-155 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016201 [exp] 729 / 0 AT3G54750 492 / 2e-168 unknown protein Lus10029345 [exp] 720 / 0 AT3G54750 482 / 2e-164 unknown protein Lus10012287 [exp] 142 / 1e-39 AT3G54750 68 / 3e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065600 [exp] 687 / 0 AT3G54750 557 / 0.0 unknown protein Potri.006G199200 [exp] 665 / 0 AT3G54750 572 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015991 pacid=23154429 polypeptide=Lus10015991 locus=Lus10015991.g ID=Lus10015991.BGIv1.0 annot-version=v1.0 ATGGCAAAAGTTGCCCAGCCTGGTTCATTACCTCCCGATTCTGATCAAATAGGTCGGGGTCCAGTAAATGTTGGTGCAATGGGCAAAAGGAAGACGCCTT CTGAGTTGAGGGGAGAGCAGTTAAGGAGGACAAGTCCTGCTGAGCTTCTTGGGGAATCTCAGTCGTCAATGCTTAATACAGCCAATAACACTGGCGGCGT GGAGAATGGTATGAAGAAACCTGATGTGTCCAGTAACCCAAAGTACACTGACACTCGCCTGAATGAACTCTATCCCGTAAAAAAAACAAGATTTGGAACG CTATCTGTGAAAGGAAACACAAAGGAAAACAAACAGCCTGAGAAACTCAACAATCTGAAGAGCCTTTCTTTTCTTACCAGTTTGAAAGCAAAGGGACGAC AAGTTTCATGCTCAGAGGAACCTGTAGCCCCTGAGGATCTCTCAAAAGATGGCATCACAAAACCTCAACAAACACTTAAAACATGCAATCAAAGTATATT TCGTAGTATTACTGAGATTTCGTCGCATGGGAAACAGTCCTCAGGCCTAGCAGTTGTTGATATGGATAAAGCATTGAAAGGACTGACTTCCCATGAACCT GCAAGCAACTTCAATGTAAATGCTGATTCATCTGGAAAGTCTGGCCAGTACTCTGATACCTTCTGCTCGGAGTGTTGTGTACCTGGCAAGAAACCTCCTC TTGACCTTACTTTGAAAACTAAAATGCGCCTGTTGGGAGCTTGCTCAGTGAGTGGGCTTCATAGGTCGATCTTGTCCAGCACATACAACAGCAGACCACA GTTTATATTTGAGCAGGGCTGTATTGAAGATAATAACAGCTCATTGCAAGCATTGACTTCCCAAGTTTGTAGTTCTAAATCCTTGCATTCTTGGATTTAT CCACAGTCTACACTACCCCCTGCCGTAATTTCAGCGTTGACTTCATCAGCTTCAGAGGGGGATTTTCTCAGAAGAAGGCAATTCGAATGGCAGGAGTCAT TTCGTAGTCTCTATTACATGTTTCGAAGAAATATTTGCAGTATCTTTTATGTGATTACTACACACTTCGTGGTCATGTTTACCAGTGCTGATAGCTCGGG GGATGCCAAGGCCTTGTGCAATGCGTACATCTCACAATCGACCAGAAATCTCCGGTCCTTGTTAAGAGAACATGATATATGCTTCTCTATGCCACTTTGC CATTCAAAAGTGGAGCAAGATGCCACTGAGTATTTAGTTGAGCTTTCAGAGATCCGGCGCCAAAACTTGGGCCAGCTTCGCGATAATTCTAAGTTGACTC ATTTCACCCTTCATCCAACTCCTATGCAGACTCGGAACCTTAGTGCCCTGAACGATGTTGACAACACCCCACAGTCTTTACTAGCTTTCAACAAAAGCAA AGACGTGCAGGGACTATATGATTTCCTATTAAATTACAGATCTTTGTTGACTATCTTCTCCGGCATGGACATTCCAGTGTTATACTCGCCTATCCCATTC TCTAATGCTGCTCTCTCTGCTCCTGAGATACGATGTGTTGATATGAAAAAAGCTGGCCGGGGAGCTGCAGCTTCCCCTAGAGATGACTCATCTGTCAGTC TCAGCTCCATCATTGAAATCAAGGGCACATATCTACCACCATGGATCGTGAGTCGCATTTGTGCTCTCATGAGCTGTGAAGTGACAAGCTTTGAGGCAAG CTTTGCTACGGAACCCAAATCCATAGGTTTGAATATTGCACTTGAGAAAGTTCATAACATGAAGTCCGGATCGGACACCTTGCAAGGAGGACATAGAAAT GATGGTTTCGGCATGGTTGAAGCAGCTGTTACTCCTTGCTTGAGCTCAGGCTACTTAAAGGGATTGAAGTACAGAGATGAATCTTACTTGGCCTCCCTCT CGCCATTGTGA
AA sequence Show only first row Show all	>Lus10015991 pacid=23154429 polypeptide=Lus10015991 locus=Lus10015991.g ID=Lus10015991.BGIv1.0 annot-version=v1.0 MAKVAQPGSLPPDSDQIGRGPVNVGAMGKRKTPSELRGEQLRRTSPAELLGESQSSMLNTANNTGGVENGMKKPDVSSNPKYTDTRLNELYPVKKTRFGT LSVKGNTKENKQPEKLNNLKSLSFLTSLKAKGRQVSCSEEPVAPEDLSKDGITKPQQTLKTCNQSIFRSITEISSHGKQSSGLAVVDMDKALKGLTSHEP ASNFNVNADSSGKSGQYSDTFCSECCVPGKKPPLDLTLKTKMRLLGACSVSGLHRSILSSTYNSRPQFIFEQGCIEDNNSSLQALTSQVCSSKSLHSWIY PQSTLPPAVISALTSSASEGDFLRRRQFEWQESFRSLYYMFRRNICSIFYVITTHFVVMFTSADSSGDAKALCNAYISQSTRNLRSLLREHDICFSMPLC HSKVEQDATEYLVELSEIRRQNLGQLRDNSKLTHFTLHPTPMQTRNLSALNDVDNTPQSLLAFNKSKDVQGLYDFLLNYRSLLTIFSGMDIPVLYSPIPF SNAALSAPEIRCVDMKKAGRGAAASPRDDSSVSLSSIIEIKGTYLPPWIVSRICALMSCEVTSFEASFATEPKSIGLNIALEKVHNMKSGSDTLQGGHRN DGFGMVEAAVTPCLSSGYLKGLKYRDESYLASLSPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54750			unknown protein		Lus10015991 [exp]	0	1
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10004454 [exp]	5.7	0.7921
AT5G55610			unknown protein		Lus10016608 [exp]	6.3	0.8096
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10026110 [exp]	13.8	0.7761
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10020576 [exp]	14.8	0.8506
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10036982 [exp]	19.5	0.8256
AT5G60930			P-loop containing nucleoside t...		Lus10032847 [exp]	24.3	0.8189
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Lus10010991 [exp]	25.0	0.7994
AT3G09080			Transducin/WD40 repeat-like su...		Lus10017180 [exp]	30.5	0.8156
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10017197 [exp]	33.5	0.7472
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Lus10002141 [exp]	34.9	0.8177

Compare expression of checked genes

Lus10015991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.