Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06530 979 / 0 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 894 / 0 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT1G31770 554 / 0 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT4G27420 526 / 1e-180 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT3G13220 525 / 1e-179 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT1G71960 507 / 7e-173 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT3G25620 484 / 5e-164 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT2G01320 250 / 2e-73 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT2G37360 249 / 4e-73 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G53510 246 / 4e-72 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012284 [exp] 897 / 0 AT5G06530 802 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10035692 [exp] 565 / 0 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034775 [exp] 565 / 0 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 553 / 0 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 545 / 0 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10016649 [exp] 526 / 9e-180 AT3G13220 1055 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Lus10022564 [exp] 523 / 1e-178 AT3G13220 1057 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Lus10034387 [exp] 521 / 4e-178 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10029635 [exp] 512 / 3e-175 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065900 [exp] 1058 / 0 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.006G199500 [exp] 1032 / 0 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.004G236500 [exp] 555 / 0 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.001G404000 [exp] 542 / 0 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.003G046800 [exp] 530 / 0 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.001G370600 [exp] 527 / 3e-180 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 517 / 2e-177 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.010G131900 [exp] 519 / 4e-177 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.019G083000 [exp] 498 / 2e-169 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.013G111900 [exp] 498 / 2e-169 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10015994 pacid=23154356 polypeptide=Lus10015994 locus=Lus10015994.g ID=Lus10015994.BGIv1.0 annot-version=v1.0 ATGGTTGGTGCAGCTGAAGACATCGAGGCCGGAATCTCGAAGCCAAAATTCCAGACTGAACCCACCTTGCCAATCTATCTCAAGTTCAGTGATGTGACTT ACAAGGTGGTGATGAAAGGAATGACTTCAACACGGGAGAAGGACATTCTGAATGGAATCACTGGCTGTGTTACTCCTGGAGAAGTTCTTGCTCTTATGGG TCCTTCAGGAAGTGGCAAAACAACACTTCTCAATCTCCTCGGCGGCCGGCTCAACCAGTCTCATAATGTTGGTGGATCAATCACTTACAATGACCAGCCT TACTCCAAGTTCCTCAAAAGCAGGATAGGATTTGTGTCTCAGGATGATGTTCTGTTCCCTCACCTGACAGTGAGGGAAACACTGACATATGCAGCTTTGT TGAGACTTCCAAGTTCACTGACAAGAGAAGAAAAGGGAAAACGTGCAATTGATGTCATCCAAGAGCTTGGCTTGGAAAGATGTCAGGATACAATCATTGG TGGCTCATTTGTTAGAGGAGTGTCTGGTGGGGAGAGGAAAAGAGTCTGCATTGGCACTGAGATCATCATCAACCCTTCCCTACTGTTTCTCGACGAACCA ACTTCCGGGTTAGACTCCACCACAGCTTTAAGGATTGTCCAGTTGCTGCAAGAAATTGCAGAGGCTGGGAAAACTGTGGTGACAACCATCCATCAACCAT CGAGCAGGCTGTTCCACAAGTTCGACAAGCTGATCCTTCTTGGAAAAGGAAGCTTGCTCTATTTCGGAAAAGCATCCGAAGTCATGGCGTATTTCTCCTC AATTGGATGTAGCCCTCTTCTAGCAATGAACCCTGCTGAGTTCTTGCTGGACCTGGCCAATGGCAATGTCACCGATGTTTCGGTGCCTTCAGAACTGGAG GACAAAGTTCAAATGGGGACAACTACTGAGACAGAGACAAGACATGAGAAACCAACTCCTGCTCTTGTTCATGAGTATCTGGTGGAGGCGTATGAGACTC GAGTTGCGAAGAGGGAAAAGAAGAAACTTTTGGCTCCCATCCCTCTAGATGAAGAGGTGAAGATGAAAGTTTCATCTCCTAAAAGGCAGTGGGGAGCAAC TTGGTGGGAACAGTACACCATTTTGTTCTGCAGAGGAATCAAAGAGCGCCGCCATGACTACTTCAGCTGGTTAAGAGTCACACAAGTTGTCTCAACAGCA ACTATCTTGGGTTTGCTATGGTGGCAGTCTGATACCACCACTCCTAAAGGCCTTCAGGATCAGGCAGGGTTGCTGTTCTTCATTGCTGTCTTCTGGGGAT TTTTCCCGGTCTTCACCGCGATATTCACGTTCCCTCAAGAGCGAGCCGTTCTGAGCAAGGAGAGAGCAGCTGATATGTACAGACTGAGTGCATATTTCAT GGCAAGAACCACCAGTGATCTTCCACTTGATCTCATCTTGCCAGTACTGTTCCTTCTCGTAGTGTATTTCATGGCCGGATTGAAGATGGGTCCGGCCCCT TTCTTCCTAACCATGGTCACAGTCTTTCTCTGCATTGTTGCAGCTCAGGGACTCGGACTCGCGATTGGTGCGAGTTTGATGGACTTGAAAAAGGCCACAA CTCTAGCTTCTGTTACTGTGATGACCTTCATGCTGGCTGGAGGGTTCTTTGTTAAGAGAATCCCGGTTTTTGTATCCTGGATCCGCTACATGTCATTCAA CTACCATACCTACAAGCTGCTCCTGAAGGTGCAGTATGAGCACAGGATGCCAGTGATCGGTGGAGCACGAATCGACAGTGGTTTAGTCGAAGTATGTGCT CTAGTAGCCATGGTCTTTGGCTACCGCCTGCTGGCTTATATCTCCCTGAGGAGGATGAAGTTGCAGTCCGGTTGA
AA sequence Show only first row Show all	>Lus10015994 pacid=23154356 polypeptide=Lus10015994 locus=Lus10015994.g ID=Lus10015994.BGIv1.0 annot-version=v1.0 MVGAAEDIEAGISKPKFQTEPTLPIYLKFSDVTYKVVMKGMTSTREKDILNGITGCVTPGEVLALMGPSGSGKTTLLNLLGGRLNQSHNVGGSITYNDQP YSKFLKSRIGFVSQDDVLFPHLTVRETLTYAALLRLPSSLTREEKGKRAIDVIQELGLERCQDTIIGGSFVRGVSGGERKRVCIGTEIIINPSLLFLDEP TSGLDSTTALRIVQLLQEIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEVMAYFSSIGCSPLLAMNPAEFLLDLANGNVTDVSVPSELE DKVQMGTTTETETRHEKPTPALVHEYLVEAYETRVAKREKKKLLAPIPLDEEVKMKVSSPKRQWGATWWEQYTILFCRGIKERRHDYFSWLRVTQVVSTA TILGLLWWQSDTTTPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAVLSKERAADMYRLSAYFMARTTSDLPLDLILPVLFLLVVYFMAGLKMGPAP FFLTMVTVFLCIVAAQGLGLAIGASLMDLKKATTLASVTVMTFMLAGGFFVKRIPVFVSWIRYMSFNYHTYKLLLKVQYEHRMPVIGGARIDSGLVEVCA LVAMVFGYRLLAYISLRRMKLQSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015994 [exp]	0	1
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015993 [exp]	1.0	0.9091
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029054 [exp]	5.5	0.8224
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10038203 [exp]	6.3	0.8454
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	7.3	0.8321
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10038313 [exp]	7.7	0.8618
AT4G16380			Heavy metal transport/detoxifi...		Lus10000039 [exp]	8.2	0.8699
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	13.5	0.8299
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026906 [exp]	17.5	0.8144
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025904 [exp]	17.5	0.8196
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10036272 [exp]	18.0	0.8212

Compare expression of checked genes

Lus10015994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.