Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35840 602 / 0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) AT1G51420 531 / 0 ATSPP1 sucrose-phosphatase 1 (.1) AT3G52340 507 / 1e-179 ATSPP2, SPP2 SUCROSE-PHOSPHATASE 2, sucrose-6F-phosphate phosphohydrolase 2 (.1.2.3) AT3G54270 464 / 2e-162 sucrose-6F-phosphate phosphohydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012284 [exp] 867 / 0 AT5G06530 802 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10005654 [exp] 102 / 2e-26 AT2G35840 79 / 2e-18 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) Lus10038119 [exp] 44 / 0.0002 AT5G20280 1647 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Lus10008056 [exp] 44 / 0.0003 AT5G11110 1384 / 0.0 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G199800 [exp] 670 / 0 AT2G35840 633 / 0.0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) Potri.016G066100 [exp] 664 / 0 AT2G35840 624 / 0.0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3) Potri.008G013300 [exp] 533 / 0 AT2G35840 547 / 0.0 Sucrose-6F-phosphate phosphohydrolase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08472 [flax] [poplar] S6PP_C Sucrose-6-phosphate phosphohydrolase C-terminal CL0137 [flax] [poplar] HAD PF05116 [flax] [poplar] S6PP Sucrose-6F-phosphate phosphohydrolase
Representative CDS sequence Show only first row Show all	>Lus10015995 pacid=23154379 polypeptide=Lus10015995 locus=Lus10015995.g ID=Lus10015995.BGIv1.0 annot-version=v1.0 ATGGACCGCTTCAAGGAACCTGCTCGTCTTATGATAGTTTCAGATCTTGATCATACCATGGTTGATCACCATGATAAGGAGAACATGTCTCTCCTTCGGT TCAATGCTTTGTGGGAAGCCCACTACAGATTTGATTCCCTGCTGGTTTTCTCCACTGGAAGGTCTCCTACGCTGTACAAAGAACTGAGGAAGGAGAAACC CATGCTGACACCTGATATAACCATAATGTCTGTGGGAACTGAGATCACTTATGGAAACTCTATGGTTCCTGATGATGGTTGGGTTGAAGTTCTGAATAAG AAATGGGACAGGAGTGTGGTCACTGAGGAGGCAACCAAGTTCTCTGAACTTACTCTTCAGTCAGAAACTGAGCAACGACCTCACAAGGTTAGCTTCTATG TGGATAAAGCCAAGGCTCAGGAGGTGATCAAGGCTCTCTCGGAGATATTTGAGAAGCGTGGGTTGGATGTCAAGATAATTTACAGTGGAGGAATGGATTT GGATATTCTTCCACAAGGAGCTGGAAAAGGCCAAGCTCTAGCTTACTTACATCACAAGTTTAAGAACGAGGGGAAATTACCGAAGAACACTCTTGTCTGT GGTGACTCTGGAAATGATGCAGAACTTTTCACCATTCCTGATGTACACGGTGTTATGGTAAGCAATGCTCAAGAAGAACTTCTGCAATGGTACAATGAAA ATGCTAAAAGCAATCCTAAAGTAATCCATGCAACGGAGAGATGTGCAGCTGGTATTATACAAGCCATTGGTCATTTCGGCCTCGGTCCCAATACTCCTCC AAGAGATGTGACCAAATCTACAGAATCTGATGCTGAAAACACCTATCCCAATCATGAACTGGTCAAGTTCTTCTTGTCCTTGGAGAAATGGAGGCGTGCA GAAATTGAGAATTCAGATGCATATTTGTCAAGTTTCTCAACTAACTCGAATCCGCCGGGCATTTTCGTCCATCCATCTGGTGCTGAGTTTTCCCTTTCCG ACGTTGGTAACAAAATCAAGAGTTGCTACGGTGACAAGCAGGGGAAAGAGTTCAGATTCTGGGTGGATCAGGTTCTATGTTCCCCAATTGGTTCTGATCA ATGGCTAACAAAGTTCTACAAGTGGGAACAATCTGCGGAAGAACGCCGGGGTTGCGTGACCACTTGTATAATTTCGTTGAAGGCTGGGAATTCGACACCA ACATTTCTGCATGTGCACCAGACATGGCTGGGAGACTCAGCAACTTGTAGAGATGAATCTAGCTGGCTCTTTTAG
AA sequence Show only first row Show all	>Lus10015995 pacid=23154379 polypeptide=Lus10015995 locus=Lus10015995.g ID=Lus10015995.BGIv1.0 annot-version=v1.0 MDRFKEPARLMIVSDLDHTMVDHHDKENMSLLRFNALWEAHYRFDSLLVFSTGRSPTLYKELRKEKPMLTPDITIMSVGTEITYGNSMVPDDGWVEVLNK KWDRSVVTEEATKFSELTLQSETEQRPHKVSFYVDKAKAQEVIKALSEIFEKRGLDVKIIYSGGMDLDILPQGAGKGQALAYLHHKFKNEGKLPKNTLVC GDSGNDAELFTIPDVHGVMVSNAQEELLQWYNENAKSNPKVIHATERCAAGIIQAIGHFGLGPNTPPRDVTKSTESDAENTYPNHELVKFFLSLEKWRRA EIENSDAYLSSFSTNSNPPGIFVHPSGAEFSLSDVGNKIKSCYGDKQGKEFRFWVDQVLCSPIGSDQWLTKFYKWEQSAEERRGCVTTCIISLKAGNSTP TFLHVHQTWLGDSATCRDESSWLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35840			Sucrose-6F-phosphate phosphohy...		Lus10015995 [exp]	0	1
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10039046 [exp]	4.6	0.7633
AT3G43110			unknown protein		Lus10020796 [exp]	6.7	0.7978
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	23.0	0.7584
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021573 [exp]	23.2	0.7676
AT3G13410			unknown protein		Lus10009853 [exp]	23.2	0.7215
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Lus10034214 [exp]	24.0	0.7750
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10001986 [exp]	27.5	0.7131
AT3G53950			glyoxal oxidase-related protei...		Lus10024342 [exp]	28.6	0.7627
AT5G11110		SPSA2, KNS2, AT...	sucrose-phosphate synthase A2,...		Lus10008056 [exp]	29.4	0.7438
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	30.5	0.7606

Compare expression of checked genes

Lus10015995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.