Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20510 833 / 0 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 707 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 690 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 664 / 0 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G20490 504 / 1e-175 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 458 / 6e-156 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 454 / 3e-154 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 442 / 6e-150 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 352 / 1e-114 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT3G21230 342 / 7e-111 4CL5 4-coumarate:CoA ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012280 [exp] 1070 / 0 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 678 / 0 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 457 / 2e-155 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 452 / 2e-153 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 446 / 3e-151 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 444 / 2e-150 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 441 / 2e-149 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 439 / 2e-148 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 436 / 2e-147 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248500 [exp] 858 / 0 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 845 / 0 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.003G099700 [exp] 469 / 2e-160 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G230200 [exp] 468 / 8e-160 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.017G033600 [exp] 461 / 3e-157 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.008G031500 [exp] 453 / 6e-154 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.004G102000 [exp] 437 / 4e-148 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 434 / 7e-147 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 426 / 2e-143 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G057000 [exp] 412 / 5e-138 AT5G63380 530 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10015998 pacid=23154404 polypeptide=Lus10015998 locus=Lus10015998.g ID=Lus10015998.BGIv1.0 annot-version=v1.0 ATGGCGCCGCCGATCAACTCAGTGATTGACCCGAGATCCGGATTCTCCCAATCCAACTTGGTTTTCTACAGCAAACGTAACCCAATCCCTCTCCCACCAA ACCCTTCCCTCGATGTCACAACCTTCATCTCTTCTCAAGCTCACCACGGCAAGACCGCCTTCATTGACGCCGCCACCGGCCGCCACCTCACTTTCCGAGA CCTATGGTCCGCCGTCGACTCCCTCGCCACGCATCTCTCGGAAACCATGGGAATCCGAAAGGGACACGTGGTTCTCCTCCTATCCCCTAATTCCATCTCC TTCCCCATTGTCTGCCTCGCCGTCATGTCCGTCGGCGCAGTAATCACCACCACCAATCCTCTTAACACTCCTCGCGAAATCGCCAAACAGATCTCTGATT CCAAGGCTTCGTTGGCTTTCACCGTCCCCGAATTAGTCCCCAAACTCGCCGGTTCGAACCCTAACGTCCCGATCGTCCTAATCGATGGAGAGAATCAGGA CTACAACTACAACGCCCAATCTGGAGACTACAACTACAACGCCCAATCTGGACCCAACCAGCCAATGATCGTCGCGAGATTGAGCCAGATGCTGATTAAG AAGGCGGTGAATCGGAGCGGAGGAAAACGAGTCAAGGAGCGAGTTGACCAGGAAGACACGGCGACTCTGCTCTACTCCTCGGGAACTACAGGGGAAAGCA AAGGAGTAGTTTCGTCTCACCGGAACATTATCGCGATGGTCCAGACAATCGTTGGACGGTTCGATCCCGCCGACGGCGACCAGATATTCGTCTGCACGGT CCCGATGTTTCACATATACGGCCTGGCCGCGTTCGCCACCGGATTGCTGGCGTCCGGATCGACGATCGTAGTCCTGCCGAAGTTCGAGATGCACGAGATG TTGTCGGCAATCGAGCGTTTCGGAGCCACTTACCTACCGCTGGTGCCGCCGATCCTGGTGGCGATGATCCACGGCAGCGATCAGATGCGGACGAGGTACA ATTTGGGATCGCTGAGGTCGGTTTTGTCAGGAGGGGCGCCTCTCAGTAAAGAGGTGATCGAAGGGTTTTTGGAGAAGTATCCTACGGTCAGGATTCTTCA AGGGTACGGATTGACGGAATCGACGGGTATCGGTGCGTCCACGGATAGCGTGGAGGAGAGCCGGCGGTATGGGACGGCCGGATTGCTGTCGCCGAGCATG GAGGCGAAGATTGTGGAGCCGGAAAGTGGTAAAGCCTTGCCGGTCAATATGACCGGTGAGCTTTGGCTCCGTGGTCCGTCCATCATGAAAGGTTACTTTA GCAATGCTGAGGCAACGTCATCGACTCTGGACTCGGAAGGGTGGTTAAGAACAGGGGACCTCTGCTACATAGATGAGGACGGCTTTATTTTCGTGGTAGA TAGGTTGAAGGAGCTGATCAAGTACAAAGGATATCAGGTTCCTCCTGCAGAGCTGGAAGCTTTGCTGCTTACTCATCCCGAAATCACAGATGCTGCTGTA ATTCCGTTTCCTGACAAAGAGGTGGGACAATACCCAATGGCGTATATTGTGAGGAAATCAGGAAGTTGGTTATCGGAAAGAGATGTGATGGGGTTTATTG CGGAGCAGGTTGCACCGTACAAACGTGTAAGGAGAGTCGCGTTCATTGATGCGGTGCCGAAGAACCCTTCTGGTAAAATTCTGAGGAAGGATCTCATCAA GCTTGCTACCTCCAAACTGTAA
AA sequence Show only first row Show all	>Lus10015998 pacid=23154404 polypeptide=Lus10015998 locus=Lus10015998.g ID=Lus10015998.BGIv1.0 annot-version=v1.0 MAPPINSVIDPRSGFSQSNLVFYSKRNPIPLPPNPSLDVTTFISSQAHHGKTAFIDAATGRHLTFRDLWSAVDSLATHLSETMGIRKGHVVLLLSPNSIS FPIVCLAVMSVGAVITTTNPLNTPREIAKQISDSKASLAFTVPELVPKLAGSNPNVPIVLIDGENQDYNYNAQSGDYNYNAQSGPNQPMIVARLSQMLIK KAVNRSGGKRVKERVDQEDTATLLYSSGTTGESKGVVSSHRNIIAMVQTIVGRFDPADGDQIFVCTVPMFHIYGLAAFATGLLASGSTIVVLPKFEMHEM LSAIERFGATYLPLVPPILVAMIHGSDQMRTRYNLGSLRSVLSGGAPLSKEVIEGFLEKYPTVRILQGYGLTESTGIGASTDSVEESRRYGTAGLLSPSM EAKIVEPESGKALPVNMTGELWLRGPSIMKGYFSNAEATSSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEITDAAV IPFPDKEVGQYPMAYIVRKSGSWLSERDVMGFIAEQVAPYKRVRRVAFIDAVPKNPSGKILRKDLIKLATSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015998 [exp]	0	1
AT4G25030			unknown protein		Lus10041415 [exp]	1.4	0.8953
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10004368 [exp]	2.4	0.8888
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	3.9	0.8743
AT2G33580			Protein kinase superfamily pro...		Lus10042226 [exp]	5.2	0.8426
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	6.0	0.8455
AT1G29290			unknown protein		Lus10029256 [exp]	7.4	0.8469
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	8.0	0.8499
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10033535 [exp]	9.4	0.8386
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	9.9	0.8453
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	10.0	0.8392

Compare expression of checked genes

Lus10015998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.