Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20510 692 / 0 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 614 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 611 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 580 / 0 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 436 / 3e-147 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 432 / 1e-145 AMP-dependent synthetase and ligase family protein (.1) AT1G20490 413 / 4e-140 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 413 / 1e-138 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 347 / 6e-113 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 331 / 2e-106 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015998 [exp] 679 / 0 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 669 / 0 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 440 / 2e-148 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 424 / 2e-142 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10002791 [exp] 421 / 4e-141 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 417 / 4e-140 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 400 / 2e-133 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 399 / 5e-133 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 394 / 4e-131 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248500 [exp] 686 / 0 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 686 / 0 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 453 / 7e-154 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.017G033600 [exp] 450 / 8e-153 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G230200 [exp] 449 / 3e-152 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.012G094800 [exp] 421 / 1e-141 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.003G099700 [exp] 420 / 3e-141 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G092300 [exp] 408 / 2e-136 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094900 [exp] 406 / 1e-135 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 405 / 3e-135 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10015999 pacid=23154441 polypeptide=Lus10015999 locus=Lus10015999.g ID=Lus10015999.BGIv1.0 annot-version=v1.0 ATGGCCCACCAGATACACTCCAAGCACCCCGCCGCCGTCGACCCCAACAACGGCTTATGCAAATCCACCTCCGTCTTCTACAGCAAGCGAGACCCCACCC CACTCCCGCCGGCCGACTCCCTCGACGTCGCCACCTTCATCGCCGCCCATGCCCACAGCGGCAAAACCGCCTTCATCGACGCCGCCACGGGGACCCACCT CACCTATCTCCAGTTCTGGCGGGCCGTTGACTCGGTCTCCGCCCGTCTCTCCGAATTGGGCCTCCGTAAGGGCCACGTGGTCCTCCTCCTTTCCCCGAAC TCCATCCTCTTCCCTATAGTCACACTCTCCGTTATCTCCTTAGGCGCCGTCATCACGACCGCTAACCCGCTCAACACTCCTAACGAGATCGCCAAACAGA TTGTCGATTCCTGTCCTTTCCTCGCCTTCACCACACATGAACTCGTCAATAAGCTCGACGCCGTTAACTTCCCCGTCATCCTAATGGACGACGTCAATAG TGGTGGGTTTCACCACACGCCAAAAGTGGAAATAGTGACGACGTTAACGCAGATGATCAAGAAGCCGTTGGATCGTAATTATCGGACGGCGAGGGAGCGA GTTAGTCAAAACGACGTCGCGACTCTGCTTTACTCGTCCGGGACGACGGGAGCGAGCAAGGGTGTTTTGTCGTCACATGGGAGTCTAATTGCCGTGGTAC AGCATGTAGTGAGACTACACCGTTTAGCTACTTTGGAACGCAAGAGACAAAATCCGTTAAAGTTCCTTTGTACCATACCGATGTTTCATATCTATGGTTT GACCATGTTCGCGATGGGGCTCCTGGCGGCAGGAACCACCATCGTGATATTGTCAAAGTACGATATTGAAGATATGTTATCGGCAATCGAAAAATTTGGT GTGACGAATTTGCCTTTGGTGCCTCCTATTTTGGTCACGATGACCAAGGACGCTGACCGGATAAAGTCAAAGTTTGACCTGGAAGTGTTAGAGTGTGTGT TGTGCGGTGGGTCGCCGTTGAGCAAGGAAGTGGCGGAGGGTTTCGCAGCTAAGTACCCGACGGTGAGGGTGAGTCAGGCTTACGGGATGACGGAGTCGCC GTGGATCGCATCGATGGACACGCGGGAAGAGTGCCAACAACAGCCGGGAGCGGTGGGGAAACTACTACCGAACATGGAGGCGATGATCGTGGCTCCGGAG AGTGGGGATGCTTTGGGAGTGAACAAGACGGGTGAGCTTTGGCTTAGAGGTCCTTACATAATGAAAGGCTACCTTAACAACCTGGAGGCAACATCGTCAA CTATTGACCCAAAGGGATGGTTAAAAACAGGGGACATCTGCTACATAGACGAACATGGCTTCCTCTTCGTGGTTGATCGGCTCAAGGAGCTCATCAAATA CAAAGGATATCAAGTTGCGCCTGCGGAGCTGGAGGCATTACTGCTGACGCATCCCCAAGTGGATGATGCGGCTGTGATTCCAATGCCACACAAGGAAGTT GGGCAGTACCCGATGGCTTATGTGGTGAGGAAGCCTGGCACCAACTTATCCTCCGCCGACATCATTGAATTCGTTGCCTCGGAGGTTGCTCCATACAAGA AAGTTCGGGAAGTGAAATTTATCGCAGCAATACCGAAAAATCCGTCAGGAAAAATCCTGAGGAAGGATTTGATCAAGCTCGCACCCGCCGCGGCCGGCTC CTCCAGGCTCTGA
AA sequence Show only first row Show all	>Lus10015999 pacid=23154441 polypeptide=Lus10015999 locus=Lus10015999.g ID=Lus10015999.BGIv1.0 annot-version=v1.0 MAHQIHSKHPAAVDPNNGLCKSTSVFYSKRDPTPLPPADSLDVATFIAAHAHSGKTAFIDAATGTHLTYLQFWRAVDSVSARLSELGLRKGHVVLLLSPN SILFPIVTLSVISLGAVITTANPLNTPNEIAKQIVDSCPFLAFTTHELVNKLDAVNFPVILMDDVNSGGFHHTPKVEIVTTLTQMIKKPLDRNYRTARER VSQNDVATLLYSSGTTGASKGVLSSHGSLIAVVQHVVRLHRLATLERKRQNPLKFLCTIPMFHIYGLTMFAMGLLAAGTTIVILSKYDIEDMLSAIEKFG VTNLPLVPPILVTMTKDADRIKSKFDLEVLECVLCGGSPLSKEVAEGFAAKYPTVRVSQAYGMTESPWIASMDTREECQQQPGAVGKLLPNMEAMIVAPE SGDALGVNKTGELWLRGPYIMKGYLNNLEATSSTIDPKGWLKTGDICYIDEHGFLFVVDRLKELIKYKGYQVAPAELEALLLTHPQVDDAAVIPMPHKEV GQYPMAYVVRKPGTNLSSADIIEFVASEVAPYKKVREVKFIAAIPKNPSGKILRKDLIKLAPAAAGSSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	0	1
AT1G71680			Transmembrane amino acid trans...		Lus10037052 [exp]	1.4	0.9220
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006856 [exp]	1.7	0.9294
AT5G62470	MYB	ATMYB96, mybcov...	myb domain protein 96 (.1.2)		Lus10002056 [exp]	5.3	0.9106
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10037598 [exp]	5.5	0.9074
AT2G21080			unknown protein		Lus10036448 [exp]	6.9	0.8730
AT2G20920			Protein of unknown function (D...		Lus10027826 [exp]	7.3	0.8810
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10015162 [exp]	7.7	0.9152
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10021389 [exp]	8.5	0.8545
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10039881 [exp]	9.2	0.8309
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10015499 [exp]	9.4	0.8891

Compare expression of checked genes

Lus10015999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.