Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76210 158 / 8e-48 Arabidopsis protein of unknown function (DUF241) (.1) AT1G20520 129 / 1e-36 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 96 / 2e-23 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 73 / 6e-15 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 71 / 2e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 68 / 3e-13 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 66 / 2e-12 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 54 / 2e-08 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 54 / 2e-08 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 54 / 5e-08 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012278 [exp] 427 / 3e-153 AT1G76210 162 / 1e-49 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025126 [exp] 79 / 4e-17 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10028381 [exp] 71 / 4e-14 AT4G35690 173 / 1e-52 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023957 [exp] 67 / 4e-13 AT2G17080 177 / 2e-55 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 66 / 2e-12 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 64 / 1e-11 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 63 / 2e-11 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023953 [exp] 62 / 5e-11 AT4G35200 192 / 8e-61 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023958 [exp] 62 / 6e-11 AT4G35200 193 / 6e-61 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248700 [exp] 236 / 3e-78 AT1G76210 152 / 1e-45 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012600 [exp] 216 / 2e-70 AT1G76210 155 / 5e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 98 / 4e-24 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103400 [exp] 82 / 3e-18 AT4G35690 145 / 1e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 80 / 2e-17 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 79 / 5e-17 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 77 / 1e-16 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 77 / 3e-16 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 76 / 4e-16 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248975 [exp] 76 / 6e-16 AT2G17080 164 / 2e-49 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10016002 pacid=23154394 polypeptide=Lus10016002 locus=Lus10016002.g ID=Lus10016002.BGIv1.0 annot-version=v1.0 ATGGCGCTCCCTAACTTCACCGCTCTTCGCGACTTGCACAACTCTGCCAACGACCTCCTGGGCTCACCGGACCTCATCCAGCGAGTAATCATCGGTCACA ACAAGAGCCACGACGATTCCTCCAAATTCCTGTTCCAAGCATCGGAGGCATCTCTCCGAATGCTGGACGTGTGCGGGGTATCGAGGGACGTTCTTTGCCT CGTCAAAGAACACCTCCTAGACCTCCAGTTCACGCTCCGGGGGAGGCGGAGGGTCTCTATCACCGAGTCACCGGACGTGATCATCGGAACCAAAGTATCG GCCTACAACGACTGCAGGAAGAAGCTGAGGAAAGAAACAAGAAAATGCCTCAAGTCCCTGAATCAAATGGTGAAGAAAAGTAAGCTGCTGACGAACGTCG ATTACAACACGGTGGAGGACCACGACAGCGGCAGGGATCTGGCGGTGGTGGCAGAGGTGCTGAGCGAAGTGAGGGCGAGTACTGTATCCATTGTCGAGTC GTTGTTGGGGTTGATCTCGATCCCCTGGCTGGATCATCACCAGAGGCAGAGTAGTAGGAGCAGAGCGACGTCGTTCGCGAGGAAGCTGATACGACGACGT AGGCTGGTTTGTGATCTGCTGTGCGACGAAACGGCGCTTCAGACTGCGAATAAGAGATTGGAGGCTGTGGAGATTGCGATTGAGGATCTTGAAGGGGAGC TGGAGTGTATGGTTCGACGGTTGATCCAGACCAGGGCTTCACTTCTTAACATTCTTACTAATTAA
AA sequence Show only first row Show all	>Lus10016002 pacid=23154394 polypeptide=Lus10016002 locus=Lus10016002.g ID=Lus10016002.BGIv1.0 annot-version=v1.0 MALPNFTALRDLHNSANDLLGSPDLIQRVIIGHNKSHDDSSKFLFQASEASLRMLDVCGVSRDVLCLVKEHLLDLQFTLRGRRRVSITESPDVIIGTKVS AYNDCRKKLRKETRKCLKSLNQMVKKSKLLTNVDYNTVEDHDSGRDLAVVAEVLSEVRASTVSIVESLLGLISIPWLDHHQRQSSRSRATSFARKLIRRR RLVCDLLCDETALQTANKRLEAVEIAIEDLEGELECMVRRLIQTRASLLNILTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76210			Arabidopsis protein of unknown...		Lus10016002 [exp]	0	1
AT4G38520			Protein phosphatase 2C family ...		Lus10025076 [exp]	19.6	0.5123
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006172 [exp]	19.8	0.6099
AT4G31340			myosin heavy chain-related (.1...		Lus10026967 [exp]	30.2	0.5515
					Lus10002646 [exp]	31.6	0.5418
AT2G38170		RCI4, ATCAX1, C...	RARE COLD INDUCIBLE 4, cation ...		Lus10004819 [exp]	92.0	0.4734
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10022240 [exp]	99.0	0.4611
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10009143 [exp]	123.3	0.3994
AT5G58840			Subtilase family protein (.1)		Lus10016483 [exp]	154.2	0.4045
					Lus10015034 [exp]	156.6	0.4161

Compare expression of checked genes

Lus10016002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.