Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35240 202 / 9e-56 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 189 / 2e-51 Protein of unknown function (DUF630 and DUF632) (.1) AT1G20530 175 / 3e-47 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 161 / 1e-41 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 161 / 1e-41 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 121 / 1e-28 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 119 / 8e-28 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT4G39790 116 / 4e-27 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 108 / 1e-24 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 107 / 4e-24 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012276 [exp] 882 / 0 AT4G35240 248 / 7e-74 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 216 / 1e-60 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10023949 [exp] 211 / 2e-60 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10029683 [exp] 156 / 4e-40 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10042722 [exp] 150 / 4e-38 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 141 / 3e-35 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 138 / 5e-34 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 121 / 1e-28 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10026763 [exp] 121 / 2e-28 AT2G27090 713 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249400 [exp] 284 / 3e-87 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G011700 [exp] 272 / 1e-82 AT4G35240 348 / 5e-109 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.009G142900 [exp] 212 / 3e-59 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 211 / 6e-59 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.002G082000 [exp] 158 / 1e-40 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 156 / 7e-40 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 147 / 5e-37 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 131 / 9e-32 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 128 / 9e-31 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G077000 [exp] 127 / 1e-30 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10016004 pacid=23154385 polypeptide=Lus10016004 locus=Lus10016004.g ID=Lus10016004.BGIv1.0 annot-version=v1.0 ATGGGCTGCAACGCCTCTAAACTCGATAGCTTACCGGCGGTCTCCCTCTGCCACCATCGCTTTCACCTCATCGACGAATCCCTCCACCGCAGCTACTCCT TCGTGGACTCTCACCTCTCTTATCTCCACTCCCTCCACACCTTCCCCACCGCACTCATCTCTTTCCTCGGTCACAACTCCGCCAGCACCAGCAACAACAA CAACAACAACAACAACAACAACATCATCTCCACCTCCGATTCTCCGACGACTGCTTCAGATGACAACACTCACAGTAAAAGCGTTTCATCTTCCGATCTC AATTTCTCGTCGTCCTCCAGCTCCGATTCCCTGTCCGACGATGACGACAACCACAAGCCGCAGTTCGGCGGCAACAACTATGATTACAATTTCCATCATC CGAAGTACGATTCCTACGGCGGAGGGAGAGGAGATTTGTCGTATTCGTGGAGCACGCCATCGCCGCCGCAGCCGAGAGCCTCCTCCGCCTGGGACTTTTT GAATTTCTTCGACGCGGCTCCTTTCGAGAGGTACGATTTCGCTGAGAAAGACAAGGGAGACGTTATTAAGAACCGTGAAGAGGCGAAATCTATTGTGAAG AAGAAGAAATTGAATGTTGAGAAGAAGAGCAAGAAGATAGAAGAAGCGAAGGATTCGTGTCCTAAGCATGGAAATCCGGCTGAGAAGAAGAAAGTGGAGG AGGAGAAAGAGAAGAAGGAAATCGATGCAGGGGCATTGGCGAAGGTAATGGAGGAGGTGGAGGCTTCGTTCCAGAAAGCTGCAGACTCTGGGAAGCAAGT GCTGAGCAAATCATGTAGTTTTCCTGATAATCCATGTGAATTTGATGGAGATGAATCAGGGCTTTCTTCGTTGAGTTTGTCTTCAACTCTGAGCAGACTC TGCATGTGGGAGAAGAAACTCTACGATGAAGTCAAGGCAGAAGAGAAGTTGCGGATGGCGTATGCAAGGTGCTGCAACAAGATGAGAAAAGGCTTAGGTG ACACTAGCAAAGTTACTGAGGAAGCAGTAGATGAATCAGTTCGAGACACGCTCAGAACGCTAGCAAATCAAATCCAGGTCGGGATTCAAGTAATCGACAG GATATCAACTAACATCAACAAATTAAGAGACGACGAGCTCTTCCCCCAGCTAACTGAGTTGATTCATAAGTTATTGGGGATGTGGGAATCAATGCTGGAA AGCCACAGATCCCAAGTCCAAGCAGTTTCAGAAGCTCAATCCCGGAACCTCCTCGTCTTGTCTAGTACAAAGCTGAGCGATGCAGGTATTGAATCAGCAA TCCAGCTCAAGATCGAGCTTCAGAGCTTGGCTCTTAGATTCATCTCATGGATTTCTTCGCAGAAACGATGCGTCAAATCCTTGAACGGCTGGCTCTCGAA ATGCCTTGTTCCTGACAAACCTGCAGAAAAGCAAGAGTATCCCCCGGTGTTTGCTCTCTGTGACAAATGGTCCACCAGTTTGGATGCTATCTCAGAGGCG GAAGCTCTCAACTCCATTCAGTCACTACTCAGGGCAGTAAACAAGCTTCTGGAGCAACAGCATGTCCATATTCAAGAACGGATGGCTGCAGACAAGGAAA TGGAGAGGAAGATAAAAGCTTTGGACAGGGAAGAACAGAGGTTGAGGAAATTGGTACAAGGTCATGGATTTGTCAAGGTGTTGGATCGAAAAACTGACGA ATGTTTCGAGTTCGGTCTCAAGCAGGCTTTCAAGGCGATGGAGAGATTTTCAGCTACTAGTTTCGAAGCTTATAGACAACTCCATGCTACAATGTAA
AA sequence Show only first row Show all	>Lus10016004 pacid=23154385 polypeptide=Lus10016004 locus=Lus10016004.g ID=Lus10016004.BGIv1.0 annot-version=v1.0 MGCNASKLDSLPAVSLCHHRFHLIDESLHRSYSFVDSHLSYLHSLHTFPTALISFLGHNSASTSNNNNNNNNNNIISTSDSPTTASDDNTHSKSVSSSDL NFSSSSSSDSLSDDDDNHKPQFGGNNYDYNFHHPKYDSYGGGRGDLSYSWSTPSPPQPRASSAWDFLNFFDAAPFERYDFAEKDKGDVIKNREEAKSIVK KKKLNVEKKSKKIEEAKDSCPKHGNPAEKKKVEEEKEKKEIDAGALAKVMEEVEASFQKAADSGKQVLSKSCSFPDNPCEFDGDESGLSSLSLSSTLSRL CMWEKKLYDEVKAEEKLRMAYARCCNKMRKGLGDTSKVTEEAVDESVRDTLRTLANQIQVGIQVIDRISTNINKLRDDELFPQLTELIHKLLGMWESMLE SHRSQVQAVSEAQSRNLLVLSSTKLSDAGIESAIQLKIELQSLALRFISWISSQKRCVKSLNGWLSKCLVPDKPAEKQEYPPVFALCDKWSTSLDAISEA EALNSIQSLLRAVNKLLEQQHVHIQERMAADKEMERKIKALDREEQRLRKLVQGHGFVKVLDRKTDECFEFGLKQAFKAMERFSATSFEAYRQLHATM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35240			Protein of unknown function (D...		Lus10016004 [exp]	0	1
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008225 [exp]	4.6	0.9617
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	6.3	0.9500
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	6.5	0.9544
AT2G21300			ATP binding microtubule motor ...		Lus10035471 [exp]	7.4	0.9379
					Lus10043485 [exp]	8.1	0.9539
					Lus10040842 [exp]	8.7	0.9520
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10016091 [exp]	8.7	0.9344
AT5G57830			Protein of unknown function, D...		Lus10010774 [exp]	8.8	0.9426
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	13.0	0.9300
AT4G35240			Protein of unknown function (D...		Lus10012276 [exp]	13.1	0.9394

Compare expression of checked genes

Lus10016004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.