Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76240 176 / 1e-53 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 66 / 1e-12 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 61 / 7e-11 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 61 / 1e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 60 / 2e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 58 / 9e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 56 / 7e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 51 / 2e-07 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51410 50 / 5e-07 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 45 / 3e-05 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012275 [exp] 374 / 2e-131 AT1G76240 240 / 5e-78 Arabidopsis protein of unknown function (DUF241) (.1) Lus10028381 [exp] 76 / 1e-15 AT4G35690 173 / 1e-52 Arabidopsis protein of unknown function (DUF241) (.1) Lus10041834 [exp] 70 / 4e-14 AT4G35690 140 / 1e-40 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 69 / 1e-13 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014450 [exp] 63 / 9e-12 AT2G17080 160 / 5e-49 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025126 [exp] 64 / 1e-11 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10003332 [exp] 64 / 1e-11 AT4G35200 177 / 3e-55 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 62 / 3e-11 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10022635 [exp] 62 / 5e-11 AT4G35200 175 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G011600 [exp] 206 / 2e-65 AT1G76240 295 / 9e-100 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249500 [exp] 204 / 1e-64 AT1G76240 289 / 2e-97 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103800 [exp] 75 / 1e-15 AT4G35720 165 / 1e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103700 [exp] 75 / 2e-15 AT4G35690 179 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103400 [exp] 71 / 5e-14 AT4G35690 145 / 1e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103600 [exp] 68 / 3e-13 AT4G35690 171 / 6e-52 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 68 / 4e-13 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 66 / 2e-12 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012100 [exp] 65 / 6e-12 AT2G17080 139 / 1e-39 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 63 / 2e-11 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10016005 pacid=23154366 polypeptide=Lus10016005 locus=Lus10016005.g ID=Lus10016005.BGIv1.0 annot-version=v1.0 ATGGTAGGCTCATTCATGCGCTCACTTTCCTTCCCCAACAAGAAACCTCCACCCCCAATCTCCCACCACCTCCGATCCATAAGTCTTCCTTCCCGCCCCC ACCCTCTAATCTCCCACCTACATTTCCAAATCAACAACCTCCGCCTCTGGAACTCCACCTCCTCCACCCAATCTCGCAGAGCCAGCTACCTCTGCGACGC CCTCACTCAGCTCAAGGAGGTCCACGACTACCTGGACGACATACTCCGCCTCCCTCAGACACAGGAGTCCCTCCGCCGCCACCCCGCCTGGATTGACCAC CTCCTCGAGGACTTCCTCCGCTTCGCCGACGCCTACGGAACCTTCCAGAACCTTGCCGCGAAAATGAAGGAGGAGCTCTTCGCGGCGAAAATGGCGGTGA GGAAGAGGGACGAGTGCAAGACGGCGTCGTTTCTGAAGTACCGGAAGAAGTTCGGTAAGGAGATGGGGAGGCTCGTCCAGGCTGTCAGGACGCGACGTCG TTTTGCGGAGTGCGAGGCCGTTTCGCTGGAGGGTGCTGAGCTGGCGCGCGTTTTAGGGGAGGTGACGGAAGTGACGGTGGAGGTGTCTGAGGCGGTTTTC AAGGGGTTTTCGGTGGGGAAAACGACGTCGTCTAAGTGGATTCGAGGGTTGAGGAGGAGGAGCGCCACGGCGGAGGAGGTGGTTGTAAGCGGGGTTGAGG GGGTTTGGGGCGTGGGGAATGGTGGGGAGAGAGTATTTAGGAGCTTGATTAGTACCAGAGTTTCCCTTCTTAACTGTCTTACTGTTCTGTGA
AA sequence Show only first row Show all	>Lus10016005 pacid=23154366 polypeptide=Lus10016005 locus=Lus10016005.g ID=Lus10016005.BGIv1.0 annot-version=v1.0 MVGSFMRSLSFPNKKPPPPISHHLRSISLPSRPHPLISHLHFQINNLRLWNSTSSTQSRRASYLCDALTQLKEVHDYLDDILRLPQTQESLRRHPAWIDH LLEDFLRFADAYGTFQNLAAKMKEELFAAKMAVRKRDECKTASFLKYRKKFGKEMGRLVQAVRTRRRFAECEAVSLEGAELARVLGEVTEVTVEVSEAVF KGFSVGKTTSSKWIRGLRRRSATAEEVVVSGVEGVWGVGNGGERVFRSLISTRVSLLNCLTVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76240			Arabidopsis protein of unknown...		Lus10016005 [exp]	0	1
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10043003 [exp]	1.0	0.9769
AT3G16850			Pectin lyase-like superfamily ...		Lus10016837 [exp]	1.4	0.9717
AT3G24530			AAA-type ATPase family protein...		Lus10043218 [exp]	5.2	0.9517
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	5.7	0.9647
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10032505 [exp]	7.1	0.9420
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10009453 [exp]	8.5	0.9519
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	9.8	0.9606
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	11.6	0.9548
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	12.0	0.9399
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	12.0	0.9481

Compare expression of checked genes

Lus10016005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.