Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76250 481 / 3e-169 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012274 [exp] 753 / 0 AT1G76250 483 / 1e-169 unknown protein Lus10008273 [exp] 454 / 5e-159 AT1G76250 374 / 2e-127 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249600 [exp] 496 / 1e-174 AT1G76250 493 / 2e-173 unknown protein Potri.002G011400 [exp] 487 / 3e-171 AT1G76250 506 / 1e-178 unknown protein Potri.012G136700 [exp] 79 / 2e-17 AT1G76250 66 / 3e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016006 pacid=23154367 polypeptide=Lus10016006 locus=Lus10016006.g ID=Lus10016006.BGIv1.0 annot-version=v1.0 ATGATCAGAAAACTCGACGACGGCACTCCGTTCTCATCTCCGCCGCCGCCGCTATCAACGAAGCATCTATTCCTCTTCGTATTCCCTCTATTCCTCTTCC TCTTCGTCCTCTTCTTCATCGTCATCTCCTCCTCCTCATCATCCACTTTCATTGATCCTCTCTCCGCCATCGCCCCTCTCGCTTCCTATTTCATCGACCT CTCCTCCTCCGCCGCTCCCGTCCACAATCCGCCGCCTCCGACGAAGGAAGTCCTGGACCGGTCCAGAATCGCGGTGTGTTTGGTAGGCGGAGCGAGGCGT TTCGAGCTCACCGGACCGTCGATCGTCGAAAACGTCCTCAGAGTTTATCCGAACGCCGAGCTGTTCCTGAACAGTCCGCTGGACGAGAACTCTTTCAAAT TCTCTCTCCTCAAGTCCGCTCCGAGGATCGCGGCCGTTCGGATTTTCCAGCCGAGTTACATCCCGGAAACCGATTCCAGTCTCCGAGTCCTCACCGCCTC CAACTCGCCCAATGGCATCCAGGGATTACTACAATACTTCAACCTAGTAGAAGGCTGCCTGAACATGATCCGAGACTACCAAACCCGGAACAACTTCACC TACGACTGGATAGTCCGAACCCGAGTTGACTCATTCTGGTCAGCACCACTTTCCCCTTCAACCTTCATCCCTTCAACTTACCTCGTCCCGGAGGGCTCAT CCTACGGCGGCCTCAACGACCGTCTTGGAATCGGCAATTTCGAAACCTCAACCATAGCCCTCTCCAGAATCTCCACCCTGCCAAACCTAGCATCGAACGG CTGCAAAGACCTCAACTCCGAATCCGCGTTCAAAGCCCAGCTCGACACCTTCAAAGTCCGTTACTCCGACGACCGGAGAGTCCCCTTCTGTATATTATCG GACAGGAAGTACGACTTCCCGCCTGTGGGGGCCACGGTTCCAGTGGCCGCATTGTCCAGTAAGGGGCCGCTAAGCGGGGCCAAATGCAGGCCGTGCACCC CGGCCTGCGAGGGGAAGTGCGTGGGGGAGGTGATGCCGAGCTTGTACAAGACGTGGAGCTGGACGGAGTGGAGGAACGGGTCGTTGAAGCTGTGCGATGC GCATGGCGAGTGGGAGAAAGGGTGGGAGAGATTGTTCGATGAGGTTGGTGGGAGGAAGCTGGCTGAGGAGAGGAAGAGAGTGGTTGGGTTGAGCTTTAAG GAATGTGTTGAGGATTTTAGGGCGGTGATGAGGAAAGCTGTGGCTTGGGATTCGCCTACGGTGGAGGAGATTTGTAGGGTTGGGAATTGTGGTCCAGATT AG
AA sequence Show only first row Show all	>Lus10016006 pacid=23154367 polypeptide=Lus10016006 locus=Lus10016006.g ID=Lus10016006.BGIv1.0 annot-version=v1.0 MIRKLDDGTPFSSPPPPLSTKHLFLFVFPLFLFLFVLFFIVISSSSSSTFIDPLSAIAPLASYFIDLSSSAAPVHNPPPPTKEVLDRSRIAVCLVGGARR FELTGPSIVENVLRVYPNAELFLNSPLDENSFKFSLLKSAPRIAAVRIFQPSYIPETDSSLRVLTASNSPNGIQGLLQYFNLVEGCLNMIRDYQTRNNFT YDWIVRTRVDSFWSAPLSPSTFIPSTYLVPEGSSYGGLNDRLGIGNFETSTIALSRISTLPNLASNGCKDLNSESAFKAQLDTFKVRYSDDRRVPFCILS DRKYDFPPVGATVPVAALSSKGPLSGAKCRPCTPACEGKCVGEVMPSLYKTWSWTEWRNGSLKLCDAHGEWEKGWERLFDEVGGRKLAEERKRVVGLSFK ECVEDFRAVMRKAVAWDSPTVEEICRVGNCGPD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76250			unknown protein		Lus10016006 [exp]	0	1
AT2G28410			unknown protein		Lus10021476 [exp]	5.5	0.9353
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10026865 [exp]	6.9	0.9491
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10027710 [exp]	9.2	0.9264
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10021731 [exp]	9.9	0.9427
AT2G28315			Nucleotide/sugar transporter f...		Lus10021464 [exp]	10.2	0.9449
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10017428 [exp]	11.0	0.9379
AT1G31130			unknown protein		Lus10028643 [exp]	17.9	0.9189
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10041496 [exp]	19.9	0.9334
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10034267 [exp]	21.5	0.9316
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10006399 [exp]	23.0	0.9096

Compare expression of checked genes

Lus10016006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.