Plant FIBer expression Database

Lus10016007 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G19003 324 / 3e-115 VPS25 E2F/DP family winged-helix DNA-binding domain (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012273
[exp]
361 / 9e-130 AT4G19003 323 / 7e-115 E2F/DP family winged-helix DNA-binding domain (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G135700
[exp]
333 / 8e-119 AT4G19003 328 / 9e-117 E2F/DP family winged-helix DNA-binding domain (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF05871 ESCRT-II ESCRT-II complex subunit
Representative CDS sequence
>Lus10016007 pacid=23154348 polypeptide=Lus10016007 locus=Lus10016007.g ID=Lus10016007.BGIv1.0 annot-version=v1.0
ATGCAGAAATTGGGTGATTTTAAGCTTCCCCAGTTCTTTAGTTATCCGCCATACTTCACTTTGCAACCGGTAAGGGACACTCGAGAGAAACAGATCCAAC
TTTGGAAGGAACTCATCATTGACTACTGTAGGACTCACAGGATATTCGTAATTGGATTGGAAGAAGAATTCCCTCTCTTTTCAAACCCTGCCATCGAAAG
ATCTTTGAGTCATGAAGCGAGGGAAGCATTTCTCTCTGCATTGGTATCTGAAGGTCGTGCAGAGTGGTTAGACAAAGGACATAGAAAATGTCTCCTCCTC
TGGCATCGTATTCAAGACTGGGCAGATATTATTGTAACATTTGTCAGAGACAATGGTCTGGATGATAGTGTGACAACCATTGAAGAAATCCGATCAGGAA
TTGAATCACGAGGAACAGAGCTTCACGGGATAGATCGGACAATTTTGATGCGAGCATTGAAACTTCTGGAGAGCAAAGGAAAGCTAGCACTGTTTAAGGG
AAGTTCCACAGATGATGAAGGTGTCAAGTTCTCAGTTTAA
AA sequence
>Lus10016007 pacid=23154348 polypeptide=Lus10016007 locus=Lus10016007.g ID=Lus10016007.BGIv1.0 annot-version=v1.0
MQKLGDFKLPQFFSYPPYFTLQPVRDTREKQIQLWKELIIDYCRTHRIFVIGLEEEFPLFSNPAIERSLSHEAREAFLSALVSEGRAEWLDKGHRKCLLL
WHRIQDWADIIVTFVRDNGLDDSVTTIEEIRSGIESRGTELHGIDRTILMRALKLLESKGKLALFKGSSTDDEGVKFSV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G19003 VPS25 E2F/DP family winged-helix DNA... Lus10016007
[exp]
0 1
AT5G01520 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2... Lus10002491
[exp]
1.0 0.9344
AT2G39920 HAD superfamily, subfamily III... Lus10028259
[exp]
14.8 0.9200
AT4G40010 SNRK2-7, SNRK2.... SUCROSE NONFERMENTING 1-RELATE... Lus10037685
[exp]
15.9 0.8860
AT5G41850 alpha/beta-Hydrolases superfam... Lus10003902
[exp]
16.4 0.8950
AT2G36840 ACR10 ACT domain repeats 10, ACT-lik... Lus10014418
[exp]
17.7 0.9081
AT5G19440 NAD(P)-binding Rossmann-fold s... Lus10014363
[exp]
23.1 0.8927
AT3G21510 ATHP3, AHP1 histidine-containing phosphotr... Lus10033999
[exp]
23.2 0.8939
AT1G62040 ATG8C autophagy 8c, Ubiquitin-like s... Lus10015563
[exp]
24.4 0.9155
AT4G26060 Ribosomal protein L18ae family... Lus10027625
[exp]
27.6 0.9088
AT3G66654 Cyclophilin-like peptidyl-prol... Lus10004174
[exp]
30.6 0.8690

Lus10016007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.