Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63610 399 / 2e-139 unknown protein AT5G14970 89 / 1e-19 unknown protein AT2G14910 87 / 7e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030753 [exp] 428 / 7e-151 AT1G63610 397 / 6e-139 unknown protein Lus10013233 [exp] 419 / 2e-147 AT1G63610 389 / 1e-135 unknown protein Lus10026601 [exp] 75 / 8e-15 AT2G14910 396 / 9e-137 unknown protein Lus10013888 [exp] 73 / 6e-14 AT2G14910 380 / 8e-130 unknown protein Lus10014506 [exp] 55 / 3e-08 AT5G14970 329 / 5e-111 unknown protein Lus10032180 [exp] 53 / 2e-07 AT5G14970 327 / 4e-111 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G011000 [exp] 408 / 3e-143 AT1G63610 431 / 3e-152 unknown protein Potri.005G250000 [exp] 408 / 4e-143 AT1G63610 441 / 7e-156 unknown protein Potri.009G092800 [exp] 85 / 4e-18 AT2G14910 421 / 9e-147 unknown protein Potri.001G298200 [exp] 75 / 7e-15 AT2G14910 419 / 1e-145 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016008 pacid=23154453 polypeptide=Lus10016008 locus=Lus10016008.g ID=Lus10016008.BGIv1.0 annot-version=v1.0 ATGAACTCTTTGACAGCAAAACCCTCCATTTTCATACCCAAATTACACTCTTCTTCTTCTTCTTCTTCTTCTGTGAGAGTTACTGTATCGAACTGGCCAC GGTTGCGTTCTTCCGCTTGGAAAGCGAGTAATAATGGCGGAGGTGGAGCAAGAGGACGGTTGGTACTATTTAGAGTTGAAGCTAGTGAATCTTCCAAGGC TGATGGGTCGTCTAATGGCTCCAAACAGTCCATCGGCGCTGTGAGGAGCAGGAGGGATATCTTGCTGGAGTACGTGAAGACTGTGCAACCTGAATTCTTA GAGCTCTTCTCCAAGCGGGCTTCGCCACAGGTGGTTGATGCAATGCGGCACACGGTGGCCAATATGATTGGGACTCTACCTCCCCAGTTCTTTGCAGTGA CTGTTACCACTGTAGCTGAAAATCTTGCACAGCTTATGTACAGTGTATTGATGACTGGTTATATGTTCAAGAATGCTCAATACCGGCTGGAGCTCCAGCA GAGTTTGGAGCAGGTTGCTCTTCCTGATGCGAAAGAGAAACAGCTGGGCGAGACAGATTATGCACCTGGTACGCAGAAGAATGTGAGTGGTGAGGTTATC AGGTGGAACAATGTCTCTGGGCCTGAAACAATAGATGCTAAAAAGTACATTGAAATACTTGAAGCAGAGATCGAGGAACTGAATCGGCAAGTGGATAAGA AGTCCTCAAATGGCGGCAATGAGTTGCTAGATTACCTCAGGACACTTGAACCCCAGAATTTGAAGGAGTTGACAAGTAGTGCAGGGGAAGATGCGGTTGT TGCAATGAATACGTTCATTAAGCGCCTTTTGGTTGTTACAGATGCTGAAAAGATGAAGATAAGCACAACAGAGACTAGCGCAGTAGAACTGGGGAAGCTG CTCCACTGGTTGATGGTGGTAGGGTACAGCATTCGGAATATCGAAGTTAGGTTCGATATGGAACGAGTACTTGGTTCATCCCCAAAGATGACAGAGTTGC CTCCACCCGGGAATTCCATTTGA
AA sequence Show only first row Show all	>Lus10016008 pacid=23154453 polypeptide=Lus10016008 locus=Lus10016008.g ID=Lus10016008.BGIv1.0 annot-version=v1.0 MNSLTAKPSIFIPKLHSSSSSSSSVRVTVSNWPRLRSSAWKASNNGGGGARGRLVLFRVEASESSKADGSSNGSKQSIGAVRSRRDILLEYVKTVQPEFL ELFSKRASPQVVDAMRHTVANMIGTLPPQFFAVTVTTVAENLAQLMYSVLMTGYMFKNAQYRLELQQSLEQVALPDAKEKQLGETDYAPGTQKNVSGEVI RWNNVSGPETIDAKKYIEILEAEIEELNRQVDKKSSNGGNELLDYLRTLEPQNLKELTSSAGEDAVVAMNTFIKRLLVVTDAEKMKISTTETSAVELGKL LHWLMVVGYSIRNIEVRFDMERVLGSSPKMTELPPPGNSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63610			unknown protein		Lus10016008 [exp]	0	1
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10028120 [exp]	2.4	0.8396
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10018318 [exp]	2.4	0.8061
AT5G45780			Leucine-rich repeat protein ki...		Lus10007292 [exp]	2.8	0.8137
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	4.4	0.8405
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038308 [exp]	4.9	0.7683
AT5G25800			Polynucleotidyl transferase, r...		Lus10028637 [exp]	6.0	0.8358
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	10.4	0.7235
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10000540 [exp]	11.4	0.8105
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10022866 [exp]	15.1	0.7374
AT2G30320			Pseudouridine synthase family ...		Lus10042233 [exp]	15.8	0.7275

Compare expression of checked genes

Lus10016008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.