Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42310 885 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G02860 195 / 2e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 195 / 3e-52 GUN1 genomes uncoupled 1 (.1) AT5G65560 192 / 3e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 187 / 6e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 189 / 2e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 186 / 8e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 187 / 2e-49 PGR3 proton gradient regulation 3 (.1) AT1G63130 183 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12100 185 / 3e-49 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012268 [exp] 1280 / 0 AT5G42310 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10023863 [exp] 207 / 1e-56 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013283 [exp] 203 / 3e-56 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10013894 [exp] 199 / 2e-53 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 195 / 1e-52 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009465 [exp] 193 / 7e-52 AT1G31840 640 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018019 [exp] 185 / 4e-50 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10003424 [exp] 188 / 1e-49 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10026558 [exp] 187 / 2e-49 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G250200 [exp] 990 / 0 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G010900 [exp] 949 / 0 AT5G42310 939 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 204 / 2e-56 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 202 / 1e-55 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 196 / 7e-53 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 195 / 9e-53 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G021200 [exp] 191 / 1e-52 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 191 / 8e-52 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G193900 [exp] 192 / 3e-51 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.006G271200 [exp] 188 / 3e-51 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016009 pacid=23154355 polypeptide=Lus10016009 locus=Lus10016009.g ID=Lus10016009.BGIv1.0 annot-version=v1.0 ATGCTCCGGTTACCACCGCCACTTCTTCCGATTGGATTTCCTTCTAATTCTCCGACTTACTATCCAATCCTCCGCCACCATCCTCTCTCTCCGCCGCTTC ACTCCACCACCTGCGCCTCAGCAACCACAACCACTAATTTACGCGACTCCTTTTCCAGTGAAAGTCTGGATAAGGATGAAGAAGACGATAGCGAGAACGA GTACGACGAGTACGAGGACGAAGACGACATTCTTCCACTTCAGAGCCGTCGCTACGACTTCACTCCGCTTCTCAGTTTCCTCTCCGGCCAGCTGTCCGAA GCATCCCCTGGCACCTCTCGCTCCGATTCCAATTCCGATTCTGACTTCTCCGTATCCCCGAGCGTGCTCGACTCCACAGAGTTCCAGCTCGCTGAGTCGT ACCGCGCGGTGCCAGGTCCGTTATGGCATTCCTTCCTGAAATCTCTTTGCTCTTCTCCCGATTCAATTGGATTAGCCTACGCAGTCGTTAGGTGGCTTCA GAAGCACAACCTGTGCTTCTCTTACGAACTACTTTACTCTATACTCATCCATGCGCTTGGACGCTCGGAGATGCTATACGAGGCTTTCTTGCTCTCGCAG AAGCAAGCTCTGAATCCCCTGACGTACAATGCGCTCATCAATGCTTGTGTGAGGAACAACGATGTTGAGAAAGCGCTCAATTTAATTTCCAGGATGCGAC AGGACGGTTATCCGTCTGATTTCATCAACTACAGCTTGATAATTAAGAATCTTACGCGGAACAACATCATAGATTGTCAGATTTTGGAGAAGGTTTATGA GGAGATTGAGTGTGATAAGCTTGAGCTGGATGTGCAGCTATCCAATGACATGATTGTTGGTTTTGCAAAGGCTGGCGATACTAGTCGAGCTATGGAGTTT CTTGCAACAGTTCAAGGAAATGGACTGAGCGTTAAAACTGGGACGCTGGTGGCGGTTATATATGCTTTGGGGAAATCTGGTAGGATTTTGGAAGCTGAGG CTATTTTTGAAGAAATGAAAGACAATGGCTGGCAACCTAGGACTAGAGCTTATAATGCATTGCTCAAAGGGTATGGAAAAGCTGGTCTACTTAAAGATGC AGAATTCATTGTCTCGGAGATGGAGAGGAATGGGGTTGCACCTGATGAACAGACATTTGGCTTTCTGGTTGATGCTTATGCAAATGCTGGTAGGTGGGTA AGTGCGAGAATTGTACATAAGGAAATGAAAGCGAGAAATCTGAAGCCTAATCCGTACGTTTACAGTAGAATCTTGTCTTCTTACCGTGATCGAGGGGAGT GGCATAAGTCGTTTCAGGTTTTGCGGGATATGAATGATGTTGGAGTGAAACCGGACAGGTACTTCTACAATGTATTGATCGATACCTTTGGCAAATTCAA TTGTCTGGATCATGCTATGACTGCTTTTGAAAGAATGCTGTCTGAGGGGATACAACCTGATACAATTACTTGGAATACTCTTCTAGATTGCCATTCTAAG GCTGGACTTCATGATAAAGCAGAGGAGTTGTTTGAAGAAATGATGGAAAAAGGTTATTCTCCTTGTGCTGCAACCTTTAACATCATGGTAAATTCATTTG GACAGCAGGAGAGGTGGGATGATGTGAAGATTTTGCTGCAGAGAATGCAAGGTCATGGTTTATTGCCTAATGCGGTAACATTCACCACACTAGTTGATAT ATATGGCCGGTCGGGGAGGTTTGATGATGCAATGGAATGCTTGGAAAACATGAAATCTTCAGGATTTAAACCCACGCCTACTATGTACAACGCGTTGATA AATGCCTACGCACAAAAGGGATTGTCTGAAGAAGCTGTGAATGCGTTTAAGATCATGACATCTGACGGCCTAAAGCCTAGTCTCCTAGCTCTCAATTCAC TGATCAATGCATTTGGCGAGGATAGGAGAGACGCAGAAGCTTTTGCAGTGCTAAAGTACATGAAGGACAATGACTTGAAGGCTGATGTTGTGACTTATAC CACTCTAATGAAGGCTTTGATTCGTTCTGATAAATTCGACAAGGTGGCTTCTGTCTATGAAGAAATGATTTCATCTGGTTGCACGCCAGATGGTAAAGCT AAAGCAATGCTAAGATCTGCGCTGAGGTACTTGAAGCAAACACTGTGA
AA sequence Show only first row Show all	>Lus10016009 pacid=23154355 polypeptide=Lus10016009 locus=Lus10016009.g ID=Lus10016009.BGIv1.0 annot-version=v1.0 MLRLPPPLLPIGFPSNSPTYYPILRHHPLSPPLHSTTCASATTTTNLRDSFSSESLDKDEEDDSENEYDEYEDEDDILPLQSRRYDFTPLLSFLSGQLSE ASPGTSRSDSNSDSDFSVSPSVLDSTEFQLAESYRAVPGPLWHSFLKSLCSSPDSIGLAYAVVRWLQKHNLCFSYELLYSILIHALGRSEMLYEAFLLSQ KQALNPLTYNALINACVRNNDVEKALNLISRMRQDGYPSDFINYSLIIKNLTRNNIIDCQILEKVYEEIECDKLELDVQLSNDMIVGFAKAGDTSRAMEF LATVQGNGLSVKTGTLVAVIYALGKSGRILEAEAIFEEMKDNGWQPRTRAYNALLKGYGKAGLLKDAEFIVSEMERNGVAPDEQTFGFLVDAYANAGRWV SARIVHKEMKARNLKPNPYVYSRILSSYRDRGEWHKSFQVLRDMNDVGVKPDRYFYNVLIDTFGKFNCLDHAMTAFERMLSEGIQPDTITWNTLLDCHSK AGLHDKAEELFEEMMEKGYSPCAATFNIMVNSFGQQERWDDVKILLQRMQGHGLLPNAVTFTTLVDIYGRSGRFDDAMECLENMKSSGFKPTPTMYNALI NAYAQKGLSEEAVNAFKIMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLKYMKDNDLKADVVTYTTLMKALIRSDKFDKVASVYEEMISSGCTPDGKA KAMLRSALRYLKQTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10016009 [exp]	0	1
AT5G08650			Small GTP-binding protein (.1)		Lus10035968 [exp]	2.4	0.9157
AT5G08650			Small GTP-binding protein (.1)		Lus10025694 [exp]	9.7	0.8809
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10037348 [exp]	11.7	0.8487
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	13.3	0.8869
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10041406 [exp]	13.4	0.8551
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	14.8	0.8842
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10018388 [exp]	15.4	0.8566
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	16.2	0.8781
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10036857 [exp]	18.2	0.8036
AT4G05090			Inositol monophosphatase famil...		Lus10007817 [exp]	19.4	0.8577

Compare expression of checked genes

Lus10016009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.