Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42320 577 / 0 Zn-dependent exopeptidases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012267 [exp] 711 / 0 AT5G42320 583 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010800 [exp] 659 / 0 AT5G42320 607 / 0.0 Zn-dependent exopeptidases superfamily protein (.1) Potri.005G250300 [exp] 633 / 0 AT5G42320 606 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF00246 [flax] [poplar] Peptidase_M14 Zinc carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10016010 pacid=23154364 polypeptide=Lus10016010 locus=Lus10016010.g ID=Lus10016010.BGIv1.0 annot-version=v1.0 ATGGCTTCTATCTTCTTCTTCTCCCTCTCCTTGTTATCTATTCTGGCCCCTTTCTCCTCTGTTTCCGGCGACCAGCAGAACGACGACGCCACTGTTACGC CCATCAATCGGGATCTCTACCATTCGAGTTCTGATTTGATGGAGCAGATAAACGCGTTGGTGCATCGTCACCCGGACAAACTCACGATGGAAACAATCAC TAACGGAAACAAAGGCTACCAAGCTAAGATCAACATAGTTACTTACTCTAGAAGTGCCCCAGCCACTATTGATACTGATGACAGGTCCAAGTTCCGTATC CTTCTGAGTTTTGGGCAGCATGGAAGAGAGCTCGTCACCACGGAGCTCGCGCTCCGGATCTTATCGATCTTAAGTGAAGAACAGTTCCTACACAATTTCG AACGCGACGCCTTCAACAACACCCTAGACAAGCTGGTCATCAAGGTGGTACCAATGGAGAATCTGAATGGCCGCAAACTTGTCGAGCAAGGAGATCTTTG TGAGAGGCGAAATGGAAGAGGCGTCGATCTGAACAGGAATTGGAGCGTCGATTGGGGCAAAAAAGAGAAGGACTATGATCCTTATGAAGAGAATCCAGGG CCTGGTCCTTTCAGCGAACCTGAAACTCAAATAATGCGGAAACTTGCCTTATCTTTCGATCCTCATGTTTGGATTAATGTGCATTCTGGAATGGAGGCTT TGTTCATGCCTTATGATCACAAGAACACTACCCCCGATGGATCAGCTTCTCAACAGATGAGGTCACTGCTTAACGAAGTGAACGAAGATCACTGTTACAG CCGTTGCATGGTTGGATCTGGAGGGGGCTCAGTAGGGTATCTTGCACATGGAACCGCAACAGATTACATGTACGATGTTGTGAAAGTGCCGATGGCTTTC ACCTTTGAGATGTATGGGGACTCCACAGCTTCACCAAAGGACTGTTTCAAAATGTTTAATCCTACAGATCACGCTACCTTCAATAGAGTGCTCAATGATT GGTCGGCTGCTTTCTTCACAATATTCAAATTGGGACCAAACCACATGGATGAAGGCCACAATTCGAAAGCGGCAGCATCCAGCCAGGACAAGTGGGTATC CATCGACGAATATCTCGACGGCTACTTGATGGAGAGAAGGAATAGATATGGGAAGAAGATAGAGGTGTTGGATCTAGGAATGCAGGAGATAAGAACGTAT TTTAGGCTCTTCTTGTTATCCTCAGTCCTATTGTTGTTCATGTTTTGTTCTAGAATTTCCAAGACCATGTCTAGCAGACCTATTGTTGCAGCTATACCTC TCTAA
AA sequence Show only first row Show all	>Lus10016010 pacid=23154364 polypeptide=Lus10016010 locus=Lus10016010.g ID=Lus10016010.BGIv1.0 annot-version=v1.0 MASIFFFSLSLLSILAPFSSVSGDQQNDDATVTPINRDLYHSSSDLMEQINALVHRHPDKLTMETITNGNKGYQAKINIVTYSRSAPATIDTDDRSKFRI LLSFGQHGRELVTTELALRILSILSEEQFLHNFERDAFNNTLDKLVIKVVPMENLNGRKLVEQGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPG PGPFSEPETQIMRKLALSFDPHVWINVHSGMEALFMPYDHKNTTPDGSASQQMRSLLNEVNEDHCYSRCMVGSGGGSVGYLAHGTATDYMYDVVKVPMAF TFEMYGDSTASPKDCFKMFNPTDHATFNRVLNDWSAAFFTIFKLGPNHMDEGHNSKAAASSQDKWVSIDEYLDGYLMERRNRYGKKIEVLDLGMQEIRTY FRLFLLSSVLLLFMFCSRISKTMSSRPIVAAIPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42320			Zn-dependent exopeptidases sup...		Lus10016010 [exp]	0	1
AT5G35180			Protein of unknown function (D...		Lus10040015 [exp]	4.2	0.8157
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Lus10026793 [exp]	23.8	0.8336
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	29.7	0.7956
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10014661 [exp]	31.3	0.7696
AT3G24530			AAA-type ATPase family protein...		Lus10011097 [exp]	32.4	0.8188
AT5G23870			Pectinacetylesterase family pr...		Lus10039238 [exp]	46.6	0.7828
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	54.2	0.7993
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000715 [exp]	55.9	0.7541
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10026731 [exp]	82.2	0.7907
AT5G56890			Protein kinase superfamily pro...		Lus10011933 [exp]	90.2	0.7598

Compare expression of checked genes

Lus10016010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.