Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20560 804 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT2G17650 704 / 0 AMP-dependent synthetase and ligase family protein (.1) AT3G16910 569 / 0 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G76290 567 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G66120 541 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 530 / 0 AAE5 acyl activating enzyme 5 (.1) AT1G65880 528 / 0 BZO1 benzoyloxyglucosinolate 1 (.1) AT5G16340 524 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G65890 524 / 0 AAE12 acyl activating enzyme 12 (.1) AT1G75960 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012266 [exp] 884 / 0 AT5G16370 733 / 0.0 acyl activating enzyme 5 (.1) Lus10028375 [exp] 723 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10037735 [exp] 589 / 0 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016870 [exp] 585 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10007369 [exp] 580 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10037734 [exp] 570 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016869 [exp] 570 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10020787 [exp] 569 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 545 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010600 [exp] 867 / 0 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G250700 [exp] 863 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 753 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.007G059401 [exp] 590 / 0 AT1G20560 594 / 0.0 acyl activating enzyme 1 (.1.2) Potri.004G082000 [exp] 587 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.005G102901 [exp] 584 / 0 AT1G20560 608 / 0.0 acyl activating enzyme 1 (.1.2) Potri.016G034800 [exp] 582 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138350 [exp] 581 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138451 [exp] 581 / 0 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.006G036300 [exp] 577 / 0 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10016011 pacid=23154380 polypeptide=Lus10016011 locus=Lus10016011.g ID=Lus10016011.BGIv1.0 annot-version=v1.0 ATGGAGGGGACCAGGAAATGCTCCGCCAATTACATCCCTCTCACTCCGATCACCTTCCTCGACCGATCGGCGGTCGTCTATGCCCACCGTCCGGCCCTCG TCCACGACGCCGTCTCTTACACATGGCAACAACTTCGCCAGAGATGCCTCAGGCTCGCCTCTGCTCTCTCTTCCCTCGGCGTTTCCCGCGGGGATATGGT TGCTGCTTTGGCCCCAAACATTCCAGCAATGTACGAGCTACATTTTGGTGTACCAATGGCTGGAGCCGTTCTTTGTACACTGAACACACGCCATGATTCA GCCATGATTGCTGTCTTGCTGAAACATTCAGAGGCCAAAGTCCTTTTTGTTGACTACCAATTGCTCCCCATTGCTCAGGGAGCATTTCAAATCCTCTCCA AGTCAGTAACCAAGCTGCCTCTGCTAGTTATGATCCCGGAGAGCGATGGAACAACATCTCCTAGTTCCTCCTCGTCTGGAATATCGGAATACGAGGGCCT CCTGGCTACGGGGAAGCTGGACTTTGAGGTTAGGCGGCCGAATGATGAATGGGATCCAATCGCGCTAAATTATACTTCGGGGACAACATCAAGTCCCAAA GGTGTTGTTTATAGCCATAGAGGTGCGTACCTGAACTCTCTTGCAGCTGCGTTTCTAAACGAGATGGGATCTATGCCGGTATACCTCTGGTGTGTCCCGA TGTTTCATTGCAATGGTTGGTGCCTCACCTGGGCTGTTGCTGCCATGGGAGGCACGAACATCTGCCTTCGAAACGTCTCCGCCTCAGGAATTTTCGACAG AATTACTAGTCATAAAGTGACACACATGGGTGGTGCGCCAACAGTGTTGAACATGATCGTAAACGCTCCGGCTGACGAGAAGAAGCCGCTTCCGGGAAAG GTCTCGGTGATGATAGGTGGCGCACCACCACCACCGCAGGTACTTTACAGGATGGAAGAGCTAGGATTCGATGTAACCCATTCCTATGGCCTGACGGAAA CCTATGGTCCTGGGACGGTCTGCACCTGGAAACCCGAATGGTCATCCCTCCCTCGAGATAAACAAGCCAAGATCAAATCACGCCAAGGAGTGCAGCACCT CGGCATGGAAGACATTGACGTAAAAGATCCGGTGACCATGAAGAGCGTCCCATCGGATGCAAGAACAATGGGAGAGGTTATGTTCAGAGGCAACACGGTG ATGAACGGTTACTTCAAGAACAAGGAAGCGACGGAGGAAGCGTTCAAAGGCGGATGGTTGAGAAGTGGTGACTTGGGAGTGAAGCATCCGGACGGATACA TAGAGCTGAAGGACAGATCGAAGGATATAATAATCTCTGGAGGCGAGAACATCAGCACGATCGAGGTGGAATCGGTGCTGTTTAATCATCCTGCAGTTCT CGAGGCTGCCATTGTTGGGAGGCCAGACGAGCACTGGGGAGAGACGGTCTGTGCTTTCGTGAAGCTGAAGCAAGGTTGCAGCGCCAGTGGCGAAGAGCTG ATTCGGTACTGCAGGGACCACCTGCCGCATTACATGGCTCCGAGGAGCGTGGAGTTTGAGGAGGATCTGCCGAAGACTTCGACTGGGAAGATACAGAAGT ATGTGCTGAGGGAGAAGGCAAAGGCAATGGGAGGGATGTCGAACCAGAGGAGCAGCAAACTGTAA
AA sequence Show only first row Show all	>Lus10016011 pacid=23154380 polypeptide=Lus10016011 locus=Lus10016011.g ID=Lus10016011.BGIv1.0 annot-version=v1.0 MEGTRKCSANYIPLTPITFLDRSAVVYAHRPALVHDAVSYTWQQLRQRCLRLASALSSLGVSRGDMVAALAPNIPAMYELHFGVPMAGAVLCTLNTRHDS AMIAVLLKHSEAKVLFVDYQLLPIAQGAFQILSKSVTKLPLLVMIPESDGTTSPSSSSSGISEYEGLLATGKLDFEVRRPNDEWDPIALNYTSGTTSSPK GVVYSHRGAYLNSLAAAFLNEMGSMPVYLWCVPMFHCNGWCLTWAVAAMGGTNICLRNVSASGIFDRITSHKVTHMGGAPTVLNMIVNAPADEKKPLPGK VSVMIGGAPPPPQVLYRMEELGFDVTHSYGLTETYGPGTVCTWKPEWSSLPRDKQAKIKSRQGVQHLGMEDIDVKDPVTMKSVPSDARTMGEVMFRGNTV MNGYFKNKEATEEAFKGGWLRSGDLGVKHPDGYIELKDRSKDIIISGGENISTIEVESVLFNHPAVLEAAIVGRPDEHWGETVCAFVKLKQGCSASGEEL IRYCRDHLPHYMAPRSVEFEEDLPKTSTGKIQKYVLREKAKAMGGMSNQRSSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Lus10016011 [exp]	0	1
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Lus10006111 [exp]	3.9	0.8207
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10033446 [exp]	4.2	0.8199
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10024385 [exp]	6.6	0.8614
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10040554 [exp]	8.5	0.8404
AT3G59060	bHLH	PIF5, PIL6	PHYTOCHROME-INTERACTING FACTOR...		Lus10029805 [exp]	12.4	0.8027
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10015154 [exp]	14.5	0.7975
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10042716 [exp]	15.0	0.8143
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10020365 [exp]	15.2	0.8397
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Lus10007512 [exp]	15.4	0.8000
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10040270 [exp]	16.1	0.7671

Compare expression of checked genes

Lus10016011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.