Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36390 781 / 0 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) AT5G03650 780 / 0 SBE2.2 starch branching enzyme 2.2 (.1) AT3G20440 437 / 1e-140 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) AT1G03310 54 / 3e-07 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) AT4G09020 52 / 1e-06 ATISA3, ISA3 isoamylase 3 (.1) AT2G39930 50 / 7e-06 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012264 [exp] 1374 / 0 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10014382 [exp] 779 / 0 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10023878 [exp] 778 / 0 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10000912 [exp] 422 / 1e-134 AT3G20440 1315 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10027725 [exp] 345 / 1e-102 AT1G66950 1077 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10003674 [exp] 224 / 4e-66 AT3G20440 477 / 7e-163 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10003675 [exp] 150 / 4e-38 AT3G20440 766 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10017150 [exp] 54 / 5e-07 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10021586 [exp] 54 / 7e-07 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251000 [exp] 1216 / 0 AT5G03650 828 / 0.0 starch branching enzyme 2.2 (.1) Potri.006G115100 [exp] 781 / 0 AT5G03650 1303 / 0.0 starch branching enzyme 2.2 (.1) Potri.001G359200 [exp] 446 / 1e-143 AT3G20440 1352 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Potri.006G070800 [exp] 52 / 2e-06 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G100900 [exp] 51 / 3e-06 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.018G132500 [exp] 50 / 7e-06 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain CL0369 [flax] [poplar] GHD PF02806 [flax] [poplar] Alpha-amylase_C Alpha amylase, C-terminal all-beta domain CL0369 [flax] [poplar] GHD PF02922 [flax] [poplar] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Lus10016012 pacid=23154354 polypeptide=Lus10016012 locus=Lus10016012.g ID=Lus10016012.BGIv1.0 annot-version=v1.0 ATGTTAGCCTCTCTGAGTCTGCTTCATCAATCGCCTCTTTGTGGGTCTGCATCACTTCATTCATCTCCATCTTCTAAGATTTCCAAAAGGCAAAGTCGAG CTGTCTCAGCAGTTTTAACCGATGACAATCGAGATGTGATGACCGCTGAAGAAGACATGGATAATATTGGACTTCTTAGTGGCGATCCTGGTTTGCAGCC TTTTAGAGATCACTTCAAATATAGGATGAAAAGGTATGTGGAACAGAAGAAACTCCTTGAAAAACATGAAGGAGGTCTTAAACAGTTTGCACAAGGTTAC CTGAAATTTGGATTCAATAGAGAAGGAGACCACATTGTCTACCGTGAGTGGGCTCCTGCTGCTCAGGAAGCGCAATTGATTGGGGACTTTAATGGGTGGG ACGGTTCGAACCACTTGATGGAAAAGAATGAATTTGGTGTTTGGAGTATAAAGCTACCCGACTCTGGAGGAAATCCAGCCATTGCCCACAGTTCGAGGGT CAAGTTCCGGTTCAAACTTGGCAATGGATCTTGGGTTGATCGCATACCGGCTTGGATACAGTATGCCACTGTGGATCCAAAAAGGTTTGGAGCTCCTTAT GATGGTGTTTTCTGGGATCCTCCTGCTGCAGAAAGGTACGAATTCAAGTACCCCCGACCACCAAAACCCAAGGCTCCTCGGATATATGAGGCGCATGGTG GAATGAGTGCTTCAGAACCCAGGGTGAATTCCTACAGAGAATTTGCTGACAATGTTCTGCCTCGTATAAAGGCCAATAACTATAATACGGTCCAGCTGAT GGCTGTGATGGAGCATTCTTATTACGCATCATTTGGGTATCATGTTACCAACTTTTTCGCTGTAAGCAGCAGATCTGGAACTCCGGAGGACCTTAAGTAT TTAATTGACAAAGCTCATAGTTTGGGACTGCATGTGCTAATGGATGTTGTCCACAGCCATGCAAGCAACAATGTCACAGATGGACTCAACGGATATGACA TCGGCCAATCCTCACAACAATCCTATTTTCACGCCGGAGAACATGGCTACCATAAGTTATGGGATAGCAGGCTCTTCAACTATTCTAATTGGGAAGTCCT CCGCTTCCTTCTTTCTAATTTGAGGTGGTGGCTTGAGGAGTTCAAATTTGATGGGTTTAGATTTGATGGAGTAACATCCATGTTGTACCATCATCATGGA ATCAACATGGCCTTTACCGGGCACTACAAAGAGTACTTCAGTGAGGCAACAGATGTTGATGCTGTTGTATACTTGATGCTGGCCAATTGTCTGATACATG ACATCTTTCCAGATGCAATTGTGATAGCTGAGGATGTCTCGGGCATGCCAGGACTTGGTCGTCCCGTCTCAGAGGGGGGTGTTGGTTTTGATTACCGATT AGCAATGGCCATCCCTGATAAATGGATTGATTATTTGAAAAATAAGACTGATGAGGAATGGTCAATGAAGGAAATACCAGGGAACTTAACTAACAGGAGG TACACAGAGAAATGTGTGGCTTATGCTGAGAGTCATGACCAGTCTATCGTAGGTGACAAGACAATGGCTTTCTTGCTGATGGACCAAGAGATGTATACTG GAATGTCGTGTTTCGATGCTGCTTCACCTAGAATTGACAGAGGGATTGCATTGCACAAGATGATACATTTTCTTACGATGGGATTAGGAGGCGAGGGCTA TCTCAATTTCATGGGGAATGAGTTTGGCCACCCTGAATGGATTGACTTCCCAAGAGAAGGCAATGAGTGGAGTTATGACAAATGCAGACGTCAGTGGAAT CTAGTGGATACAGAGCATCTGAGATACAAGTTTATGAATGAGTTCGACAGCTCCATGAACAAGCTAGATGAGAAGTTCTCATTTCTTGCATCAAAGAAGC AGATAGTGAGCTGCACTAATGAAAAAGATAAGGTTATCGTATTTGAGCGAGGAGATCTTGTTTTTGTGTTTAATTTTCATCCAGAGAAGACATATGAGGG GTACAAAGTTGGGTGTGACTTGCCTGGAAAATACAGAGTTGCATTGGACAGTGATGCTCGGGAGTTTGGTGGATATGGAAGAGTGGGTCACGACGTGGAC CATTTCACCTCTCCTGAGGGGATCCCAGGGGTGCCCGAGACGAACTTCAACAACCGTCCCAACTCCTTCAAAGTCCTTTCACCGCCTCGTACTTGTGTGG TTTACTACAATGCGGATGAGAGCGAAGAAAGCAAATCGTCATCAGCAGCTGTTGATGATGTGTCAAAAAAGCTAGAAGAATCTGGTGAGCTGAAGTTGGT TGATGATCTGCAAGTGAATCTGGATGATGATAATGTTAGCCTGAGGCAGAAGATGAAAAGGGCACAAGTAGAGAAGAAGCTTGAGGAAGAAGAAAACTCA TCAGATGACTAG
AA sequence Show only first row Show all	>Lus10016012 pacid=23154354 polypeptide=Lus10016012 locus=Lus10016012.g ID=Lus10016012.BGIv1.0 annot-version=v1.0 MLASLSLLHQSPLCGSASLHSSPSSKISKRQSRAVSAVLTDDNRDVMTAEEDMDNIGLLSGDPGLQPFRDHFKYRMKRYVEQKKLLEKHEGGLKQFAQGY LKFGFNREGDHIVYREWAPAAQEAQLIGDFNGWDGSNHLMEKNEFGVWSIKLPDSGGNPAIAHSSRVKFRFKLGNGSWVDRIPAWIQYATVDPKRFGAPY DGVFWDPPAAERYEFKYPRPPKPKAPRIYEAHGGMSASEPRVNSYREFADNVLPRIKANNYNTVQLMAVMEHSYYASFGYHVTNFFAVSSRSGTPEDLKY LIDKAHSLGLHVLMDVVHSHASNNVTDGLNGYDIGQSSQQSYFHAGEHGYHKLWDSRLFNYSNWEVLRFLLSNLRWWLEEFKFDGFRFDGVTSMLYHHHG INMAFTGHYKEYFSEATDVDAVVYLMLANCLIHDIFPDAIVIAEDVSGMPGLGRPVSEGGVGFDYRLAMAIPDKWIDYLKNKTDEEWSMKEIPGNLTNRR YTEKCVAYAESHDQSIVGDKTMAFLLMDQEMYTGMSCFDAASPRIDRGIALHKMIHFLTMGLGGEGYLNFMGNEFGHPEWIDFPREGNEWSYDKCRRQWN LVDTEHLRYKFMNEFDSSMNKLDEKFSFLASKKQIVSCTNEKDKVIVFERGDLVFVFNFHPEKTYEGYKVGCDLPGKYRVALDSDAREFGGYGRVGHDVD HFTSPEGIPGVPETNFNNRPNSFKVLSPPRTCVVYYNADESEESKSSSAAVDDVSKKLEESGELKLVDDLQVNLDDDNVSLRQKMKRAQVEKKLEEEENS SDD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10016012 [exp]	0	1
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	1.7	0.8810
AT4G09020		ATISA3, ISA3	isoamylase 3 (.1)		Lus10036474 [exp]	3.5	0.8182
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	4.7	0.8380
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10026662 [exp]	9.8	0.8221
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10020894 [exp]	11.4	0.8042
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	12.7	0.8245
AT2G44830			Protein kinase superfamily pro...		Lus10042912 [exp]	13.6	0.8257
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	13.7	0.8333
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	14.2	0.8237
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Lus10012363 [exp]	15.4	0.7991

Compare expression of checked genes

Lus10016012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.