Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30600 1071 / 0 BTB/POZ domain-containing protein (.1.2.3.4.5) AT2G46260 49 / 2e-05 BTB/POZ/Kelch-associated protein (.1) AT3G61600 48 / 3e-05 ATPOB1 POZ/BTB containin G-protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012262 [exp] 1514 / 0 AT2G30600 1117 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5) Lus10017545 [exp] 46 / 0.0001 AT3G61600 820 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10028744 [exp] 46 / 0.0001 AT3G61600 744 / 0.0 POZ/BTB containin G-protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251300 [exp] 1211 / 0 AT2G30600 1140 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5) Potri.002G010100 [exp] 1201 / 0 AT2G30600 1110 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5) Potri.002G166700 [exp] 50 / 6e-06 AT3G61600 931 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.014G093700 [exp] 50 / 7e-06 AT3G61600 945 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.003G135300 [exp] 45 / 0.0002 AT3G61600 733 / 0.0 POZ/BTB containin G-protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF07707 [flax] [poplar] BACK BTB And C-terminal Kelch CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0202 [flax] [poplar] GBD PF00754 [flax] [poplar] F5_F8_type_C F5/8 type C domain CL0004 [flax] [poplar] Concanavalin PF12248 [flax] [poplar] Methyltransf_FA Farnesoic acid 0-methyl transferase
Representative CDS sequence Show only first row Show all	>Lus10016014 pacid=23154456 polypeptide=Lus10016014 locus=Lus10016014.g ID=Lus10016014.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAGAAAGGGAAGAGGTTCCTGACGGTAGCTCCATTCCAGTGTGCTTGGAGGAAAGACTTGAAATTCCGGGAAGCTGGAAGAGGGTGCGTCT CTTTTGATGCTTTTGCTCACAATGATGTAACCGTGGTGTTCAGGGAGAATGTTGGGAGCCTGCATTACCATTACAAGAGGGATAACAGCCCTCATTATAC CGTCATTCTCGGGAGCAATCGAAATCGACGGTTGAAGATCGAGGCGGATGGAAAGACCGAGGTTGATGTGGAAGGTATCGGACTTTGCTCCTCTGCTTTC CAGAGCTACTGGATCAGCATCTATGATGGCTTGATCAGTGTAGGCAAAGGAAGGTATCCTTTCCAGAACATAATGTTTCAGTGGCTGCATTCAAATCCGA ATTGCAACGTTCGTTACGTCGGGCTTAGTAGCTGGGATAGGCATGTTGGTTATAGAAATGTCAACGTTTTGCCATTGCCTCATGACCATATGCTGCTGTG GAAGCAAGTTGATTCAGGAGAGTTTGAAGGGAAGGAAGTCAGTGAAGACGAGGAGGAGGAGCCGGAATCCAAGGAAGTTTCGTATGAGAAATGGGGACTT CGTAATTTCCTCGAAAGCTGGGAACTTTCTGACGTTTTCTTCATTGTTGGCATGGACGAGAGACCTATCCCGGCTCATAAAGTCATTTTGCAAGCTTCAG GTAGTTTTCCTTTCAGTTCGTCGAATGAAGATGTCATCCAGCTTAAGACTGTATCGTATCCAGTTATGCATACGCTACTTCAATATATCTACACCGGTCG AACTCAGGTTTTAGAGTCTCAAGTTGAGCTGCTGCTGGAGTTGAGCTCACAGTTTGAGGTGATGCCATTTGCAAGGCAGTGTGAAGAGCTTCTGGAAAGG TGTAAACTAAACAAGAAGTTGTTTGGAACCGGTAAGAGTGTGGAGTTGTGCTATCCGAACTCTCGACCCCATTCGTGTACAATGTTTCCTGCGGGATTGC CTGTGAATCAGAGACGGCTCAACGAATTGTATTCAGCCGGAGAGTACAGTGACCTTAATATTTTCATAGAGGGATATGGTCTTGTTGCAAAGCCTCATAA AATTGTTATTAGCTTATGGAGTGTGCCATTTGCGAAGATGTTCACAAATGGGATGAGCGAGAGCAGCTCGTCGGAAGTTCATCTAAGGGATGTGCCAGTG GAGGCATTCAAGATAATGCTTGAATTCATGTATAGTGGTGAACTCAATTTGGAGGATGGTGCAGATGCTGGAACCTTGTTACTCCAACTTCTTTTGTTAG CTGATCAATTCGGAGTCATGATCCTCTATCAGGAATGCTGCAAAACGCTTTTAGAATGCCTATCAGAGGACGCAGTGTGTCCAATCCTGCAAGTGGTTTC ATCGATCTCATCTTGTAAACTCATTGAAGAAACCTGTGAGAGAAAGTTCGCAATGCAGTTCGATTACTGCACAACCGCAACCCTTGACTTCATTTTGTTA GATGAGGCAACTTTTAGCAATATCATTCAGCATCAAGATCTAACAGTAACATCTGAGGAGAAAGTCCTCAATGCAATTCTGATGTGGTGCATACAAGCCG AAGAACTATACGGATGGGAAGCTGTGGATGAACTAATTGCATCCTCAACCCATGACCTACTTTCCAGAGACCGGTCTCAATCATTGAATGACTTGTTACC ATTTGTCCGATTTCCATTGCTCCCCTACAGCATACTTAAAAAGTTGGAGCAGAGCAACCTCTGCAAGCATATCCACATTTTATCTGATCTTGTAAGGGAG GCGATCGGCTATCTGGACCTTGGATTGACCAACAGCAACCTAGGAAAGGAATTCAACCTAAGATTTCAACATAGGCGATCGAGCTACAAGGAGCTCCAGT ACATTTGTGATGGAGACAGCAATGGGGTTCTGCATTTTGCTGGCACTTCGTACGGACAACATCAGTGGGTTAATCCTGTTCTATCAAAGAGGATCTGCAT TACAGCTAGTAGTCCTGCTTCAAGATACACGGACCCTAAGGCATTGGCATCGAGGTCCTATCAGGGAATGTGCTTTGCTGGACCCCGAATGGAAGATGGA CGAGTATGCTCATGGTGGATGGTAGACCTCGGCCAAGATCATCAGCTTATGTGCAACTACTACACGTTAAGGCTAGATGGCTCAAGAGCTTTTATAAGGT CTTGGAGACTCCAGGGCTCATTGGATGCTAAGACTTGGACAGACTTGAGAGTACACAATGAGGACCAAACAATGAGCAAACCGGGACAGTTCGGGTCATG GCCGGTCACGGGGCCAAACGCGCTGCTGCCTTTCCAATACTTTAGAGTGGTATTAACCAGCCCTACGACTGATGTATCGAATCCCTGGAACTTGTGCATT TGCTTCTTGGAACTCTATGGTTTCTTCCGTTAA
AA sequence Show only first row Show all	>Lus10016014 pacid=23154456 polypeptide=Lus10016014 locus=Lus10016014.g ID=Lus10016014.BGIv1.0 annot-version=v1.0 MEEEKGKRFLTVAPFQCAWRKDLKFREAGRGCVSFDAFAHNDVTVVFRENVGSLHYHYKRDNSPHYTVILGSNRNRRLKIEADGKTEVDVEGIGLCSSAF QSYWISIYDGLISVGKGRYPFQNIMFQWLHSNPNCNVRYVGLSSWDRHVGYRNVNVLPLPHDHMLLWKQVDSGEFEGKEVSEDEEEEPESKEVSYEKWGL RNFLESWELSDVFFIVGMDERPIPAHKVILQASGSFPFSSSNEDVIQLKTVSYPVMHTLLQYIYTGRTQVLESQVELLLELSSQFEVMPFARQCEELLER CKLNKKLFGTGKSVELCYPNSRPHSCTMFPAGLPVNQRRLNELYSAGEYSDLNIFIEGYGLVAKPHKIVISLWSVPFAKMFTNGMSESSSSEVHLRDVPV EAFKIMLEFMYSGELNLEDGADAGTLLLQLLLLADQFGVMILYQECCKTLLECLSEDAVCPILQVVSSISSCKLIEETCERKFAMQFDYCTTATLDFILL DEATFSNIIQHQDLTVTSEEKVLNAILMWCIQAEELYGWEAVDELIASSTHDLLSRDRSQSLNDLLPFVRFPLLPYSILKKLEQSNLCKHIHILSDLVRE AIGYLDLGLTNSNLGKEFNLRFQHRRSSYKELQYICDGDSNGVLHFAGTSYGQHQWVNPVLSKRICITASSPASRYTDPKALASRSYQGMCFAGPRMEDG RVCSWWMVDLGQDHQLMCNYYTLRLDGSRAFIRSWRLQGSLDAKTWTDLRVHNEDQTMSKPGQFGSWPVTGPNALLPFQYFRVVLTSPTTDVSNPWNLCI CFLELYGFFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30600			BTB/POZ domain-containing prot...		Lus10016014 [exp]	0	1
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10026376 [exp]	2.2	0.8288
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010376 [exp]	12.4	0.7471
AT4G26410			Uncharacterised conserved prot...		Lus10034621 [exp]	18.8	0.7537
AT2G44130			Galactose oxidase/kelch repeat...		Lus10016214 [exp]	19.6	0.7595
AT4G15020			hAT transposon superfamily (.1...		Lus10000517 [exp]	21.5	0.6993
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10011141 [exp]	22.1	0.7858
AT1G70650			Ran BP2/NZF zinc finger-like s...		Lus10032790 [exp]	39.7	0.7630
AT3G61370			Protein of unknown function (D...		Lus10027936 [exp]	57.2	0.7370
AT1G28260			Telomerase activating protein ...		Lus10015430 [exp]	71.9	0.7419
AT1G73170			P-loop containing nucleoside t...		Lus10015985 [exp]	77.5	0.7303

Compare expression of checked genes

Lus10016014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.