Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42340 692 / 0 PUB15 Plant U-Box 15 (.1) AT3G46510 509 / 3e-173 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 446 / 6e-145 AtPUB12 PLANT U-BOX 12 (.1) AT3G54850 433 / 4e-144 ATPUB14 plant U-box 14 (.1) AT1G71020 352 / 9e-113 ARM repeat superfamily protein (.1.2) AT1G23030 327 / 2e-103 PUB11 ARM repeat superfamily protein (.1) AT1G29340 250 / 3e-73 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT2G23140 250 / 2e-72 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G01400 224 / 2e-67 ARM repeat superfamily protein (.1) AT3G07360 223 / 1e-65 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012260 [exp] 1184 / 0 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016565 [exp] 476 / 5e-160 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 472 / 2e-158 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 448 / 8e-150 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10043471 [exp] 370 / 2e-119 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 364 / 1e-109 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10007511 [exp] 303 / 2e-93 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 290 / 2e-88 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10038699 [exp] 285 / 9e-88 AT3G54850 599 / 0.0 plant U-box 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009900 [exp] 805 / 0 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.004G205000 [exp] 662 / 0 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.009G165900 [exp] 661 / 0 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.001G238500 [exp] 488 / 8e-165 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 487 / 2e-164 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 463 / 1e-155 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 455 / 1e-152 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.010G113900 [exp] 375 / 2e-121 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 368 / 1e-118 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.011G071400 [exp] 265 / 1e-78 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10016016 pacid=23154378 polypeptide=Lus10016016 locus=Lus10016016.g ID=Lus10016016.BGIv1.0 annot-version=v1.0 ATGAACGAGGAGGAAAACGGACCAGGAAGAGGATCAACATCAGCAGGAGAAGACGAGATTGAATCCACGTCGCCACAGGAGGGAAATGACGACGAAGACA TTGTTGAATCCATCCTGAGAGTGATCGAATCGGTTGCGAGGCTCGGAGGGTACAGAGGAACCCACCGGAGAGAGTGCATCGCCCTCGTCCGGCGCATGAA AACGTTCCTCCCCTTCCTGGAGGAGGTTCGGGACCTCGAAACGACCCCTATTTCGGAGGAAGGGGTCGAATGCCTGAAGAACCTGAAGGCTACGTTCGTC ATGGCCGGAAAGCTTCTCAAAACTTGTAACGAAGGAAGCAAGATTTACCTGGCTGCGGATAGAGAGGCGGTGACATCGAGATTTCGAGCAGTCCACGAAA AGTTGTTCAGCGTACTAGAATCAATACCGTACGAGGAGCTAGGGATATCGGACGAGGTAAGGGAACAAGTGGACCTAATGAGGAACCAGTTGAAACGACC CAACAACAACAGGCACTCGGACTCGCAAGACATGGAGCTGGCGATGGACCTGATGTTCGTGCTGTCGAAGAAAGACGACCAGTCGAATTCGGACAGCGCC ATCATCGAGAGGATAGCGAGGAAGCTGGAGCTCCACGACGTGGAGAACGTGAAGAACGAGACGATAGCGGTGAGGAACTTGGTCCGGGAGAGGGGAGGGG TAGATCACGACGAGACATTGCAGCACATGGTTGAGATGCTGAACAAGATGAGGAAGATGGTGGGGTTGGAAGAGAGCTGTGATTTGAATAGTGATGGTGG TGGTGGTGGGAAGAAATTGCTATCCAAGAGTCCGTCTTTGATCATCCCTCACGAGTTCCTTTGCCCCATTACTCTTGAGATCATGGTTGATCCTGTCATC ATTGCTTCTGGTCAGACATACGAAAGGGAGAGCATCCAAAAATGGCTAGACGCAAACCACATGACATGTCCAAAGACAAGACAGACGCTAGACAACACAT CCATCGCACCAAACTACGCCTTGAAGAACCTCATCCAAAATTGGTGCGACAAGCACAAGTTCAAGCTCCCCAAGAGAGAGTCAACCACCACGGCCGCCAG TGCTACCACCACTACCGATCCGGACCAATGCAGAAGCATCGACCAAGTCTCCACTTTAGTGGAAGAGCTCTCTTCCAGCAACTTGGACGTGCAGAGGAGA GCCGTGAAGGAGATCCGGATGCTGTCCAAGGAGAGCCCCGAAAACAGAGTGTCCATTGCGGATTCCGGTGGGATCTCCCCCATCGTTGACTTGCTGGGTT ACCCGGATTCCAAGATCCAGGAACACGCCGTGACGGCGCTGATGAACCTGTCGCTGGATAAGACGAATAAGAGGGCTATAACGGAGGCTGGAGCCATACC TGCTATCGTTGATGTGTTGCAGAGTGGGTCCAGAGAGGCTAAGGAGAACTCTGCTGCGGCTTTGTTCAGCTTGTCCATGTTGGACGAGAACAAGGTGGCG ATCGGGCTCTCCGACGGAATCCCACCGCTAGTCGACCTCCTCCAACGCGGGACGATGAGAGGGAAGAAGGACGCATTAACGGCGCTCTTCAACCTCTGCC TCAACGACTCAAACAAGGAGAAAGCCATCGATGCCGGGATCGTGGACCCATTGCTCCAGCTACTGAAAGACCGGAACTTGAACATGATCGACGAGACCTT ATCCATCTTCCTGCTCCTCGCTTCGCACCCGGAAGGAAGGAACGCCTTGGGGCAGCTTCCGTTCATCGAGATGTTGGTGGAGTTTATGGCGGAGGGGACT CCGAAGAACAAGGAGTGTGCCACGTCGGTTCTTCTGGAGCTCGGGTCAGGTAATTCGAACTACATGCTGATGGCGCTCCAGCTCGGGGCGTATGAGCATT TGGTGGAGTTGAGTAAGAGCGGGACGGATCGAGGGAAGAGGAAGGCTAATTCCTTGCTTCAGTTGATGAGCAGAACTGAACAGCTTTGA
AA sequence Show only first row Show all	>Lus10016016 pacid=23154378 polypeptide=Lus10016016 locus=Lus10016016.g ID=Lus10016016.BGIv1.0 annot-version=v1.0 MNEEENGPGRGSTSAGEDEIESTSPQEGNDDEDIVESILRVIESVARLGGYRGTHRRECIALVRRMKTFLPFLEEVRDLETTPISEEGVECLKNLKATFV MAGKLLKTCNEGSKIYLAADREAVTSRFRAVHEKLFSVLESIPYEELGISDEVREQVDLMRNQLKRPNNNRHSDSQDMELAMDLMFVLSKKDDQSNSDSA IIERIARKLELHDVENVKNETIAVRNLVRERGGVDHDETLQHMVEMLNKMRKMVGLEESCDLNSDGGGGGKKLLSKSPSLIIPHEFLCPITLEIMVDPVI IASGQTYERESIQKWLDANHMTCPKTRQTLDNTSIAPNYALKNLIQNWCDKHKFKLPKRESTTTAASATTTTDPDQCRSIDQVSTLVEELSSSNLDVQRR AVKEIRMLSKESPENRVSIADSGGISPIVDLLGYPDSKIQEHAVTALMNLSLDKTNKRAITEAGAIPAIVDVLQSGSREAKENSAAALFSLSMLDENKVA IGLSDGIPPLVDLLQRGTMRGKKDALTALFNLCLNDSNKEKAIDAGIVDPLLQLLKDRNLNMIDETLSIFLLLASHPEGRNALGQLPFIEMLVEFMAEGT PKNKECATSVLLELGSGNSNYMLMALQLGAYEHLVELSKSGTDRGKRKANSLLQLMSRTEQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42340		PUB15	Plant U-Box 15 (.1)		Lus10016016 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10014712 [exp]	2.0	0.8176
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	17.1	0.8270
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	21.6	0.8062
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	21.7	0.8009
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10005710 [exp]	25.7	0.7956
AT5G35370			S-locus lectin protein kinase ...		Lus10028067 [exp]	35.2	0.7547
					Lus10033509 [exp]	36.5	0.8056
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10029235 [exp]	37.8	0.7858
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	43.2	0.7907
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10034045 [exp]	59.6	0.7873

Compare expression of checked genes

Lus10016016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.