Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76350 694 / 0 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 680 / 0 NLP4 Plant regulator RWP-RK family protein (.1.2) AT2G17150 619 / 0 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G64530 442 / 2e-142 NLP6 Plant regulator RWP-RK family protein (.1) AT4G35270 429 / 1e-135 NLP2 Plant regulator RWP-RK family protein (.1) AT4G38340 410 / 1e-130 NLP3 Plant regulator RWP-RK family protein (.1) AT4G24020 409 / 3e-128 NLP7 NIN like protein 7 (.1) AT3G59580 381 / 3e-118 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 376 / 6e-116 NLP8 Plant regulator RWP-RK family protein (.1.2) AT5G66990 50 / 3e-06 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012257 [exp] 1624 / 0 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10030744 [exp] 682 / 0 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 681 / 0 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023930 [exp] 555 / 0 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 548 / 0 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10003199 [exp] 425 / 2e-134 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10008143 [exp] 392 / 4e-122 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 384 / 4e-119 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023049 [exp] 380 / 6e-119 AT4G24020 783 / 0.0 NIN like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009700 [exp] 924 / 0 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 902 / 0 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 585 / 0 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 555 / 0 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 462 / 3e-148 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 445 / 3e-142 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 434 / 1e-137 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 427 / 1e-134 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.016G042900 [exp] 412 / 6e-130 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.007G133400 [exp] 390 / 9e-121 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10016018 pacid=23154445 polypeptide=Lus10016018 locus=Lus10016018.g ID=Lus10016018.BGIv1.0 annot-version=v1.0 ATGGATGGTTCTTCTTGGCAATCAGGTATGCTGCTTGGTTCACTGGCGGATACATCTATGGATTTCGATTACATGGATGAGTTACTGCTAGATGGCTGCT GGCTGGAGACAACTGATGGGTCAGACTTTTTCAATCCTGCTGCTCCATCTGATCAATTTGCTGCAACTTTCCACCCATCAACTGTATTATCGCCTGCTGT AGATATCAACAATGTTGATGTGTCTGCTGGTACTTCTCAAAGGAACACCGAGGAGGAAGGCAAGCAAATGTCGGTGTTTGACAAGGCTGGTGTCTCTGGG AGGGAGAATGATGATGGCACAGCTGAAGGTTCTGGTTTCAGCCAAAGGTGGTGGATTGGACGTAAACCAAATCCAATTCCTGGAAGTACAGTGAAGGATA GATTGGTTGGGGCAATTGGGTCCATTAGAGACTTGATAAAAGATAAGGATGCCCTTATACAGATATGGGTGCCCACGGACAGCAGGATGGGGAGGCGTGT GTTGACAACTTTTGATCAGCCTTTTGCAGTTGATGGCAGTTCTCAGAGACTGGCAAACTATAGGGACATTTCTATTAACTATCAGTTCCCAGCTGAAGAG GGTGGTGACTCCAAGGACTTTGCGGGGATGCCTGGTCGTGTTTTCTTGGGTAAAGTTCCTGAGTGGACTCCCGATGTTCGGTTCTTTAGAAATGACGAGT ACCCGCGAGTTGATCATGCTCGACAGTATAATGTATGCGGTACGCTGGCTGTTCCGGTGTTTGAGCAACATAGTAAAGTCTGCTTAGGCGTCATTGAGAT TGTTACAACCAGGCAAGAAGTCAAGTATCAATCCGAGCTTGAAAAGATCTCCAAAGCACTTGAGGCTGTTGATCTTAGGAGTTCAGAAACTCCAAGTACA CAAAGTATGAAGTCCCGCGATATAGCCTACCAAGCTGCACTGCCAGAAATCCAACAGGTGCTGAAATCTGCCTGTGAGACTCACAACTTACCCTTAGCTC AGACTTGGGTCCCATGCATCCAACAAGGAAAAGGCGGTAGTCGACATTCAGATGAGAATTACTTCCACTGTGTCTCAACCGTGGATCAAGCTTGTTTTGT ATCAGATACTCAGATAAAAGGTTTCCATGAGGCTTGCTCAGAACATCACTTACTGAAGGGTCAAGGGGTGGCGGGACGAGCTTTTACCACGAACGAGCCT TGCTTCTCGAGTGACGTAACTTTGTACAGCAAGACCGAATATCCACTTTCACATCATGCTAGAATGTTTGGGTTATGTGCAGCCGTAGCAATCCGGTTAA GAAGTGTGCACACGGGTGCTGCAGACTTTGTACTGGAGTTCTTCCTTCCTGCAGGCTGCAGAACTCCCGAAGAGCAAGAGAAGATGCTTAATTCGCTTTC TGTCATCATACAACACGTTTGCCAAACCTTAAGGGTCGTAACGGATAAAGAATTAGAGGAGGAAGCAGATTCAGTTGTATTTCCTCATGTTGATCTCACT GATGTCATTACTGTTCCATCAGCTGAAAAAGGTATGGAATTGCTGGAGACATCTCCAGATGATAAAAAAGGGGGTATTGAGAATGATGGTGAGTTTGGTG TGGGTGGTTTCTCATGCACTATTGAAGGTAAACAAGTAGACAGAAAACGAACCAAGGCGGAGAAAAAGATCACACTCGATGTTCTAAGGCAACATTTTGC TGGCAGCTTAAAAGATGCTGCTAAGAGTCTTGGCGTGTGCCCAACAACCCTGAAAAGGATCTGCAGGCAACATGGAATATCTCGATGGCCATCTCGAAAA CTAAAGAAGGTTGGTCATTCATTGCAGAAGCTTCAAGTTGTGATGGACTCGGTTCAAGGTGCCTCTGGTGCTTTACATATCCGCTCCTTCTACACAAACT TCCCCGAGCTGGGTTCTCCGCAAGGTTCTAAAAGCTGCAGCCCCTTGCCAGTTTCAAAGCTAGACCAAAATCCAGAACCATCAGCCACACCGCCCGATGC TACAGCTAAATCAACTTCTTCTTCGTCGTGCAGTCAAGGTTCTAGCTCAAGCCATTCCCTTTCCAGCGGATCACAACAGCAACAACAGTCAGCCACCGAG TTCGCTGTGCTCGGAGAAGAATCGGAACAGAAACCCTTGCTCGACCAATCGGCTACAAATGGTTTAGTGAAAAGGGTCAGAAGTGAAGCTAGACTTCGCA TCTCTGGTGAAGTAGAAGCAGCAGCAGCCAAAGTGACACTTGCAAGAGCTCAGAGCCATCAGTCTCTGGCCGAAGAACAGGCTAACTTGGGGAACCGAAT TCATCAGTTGGCGAAATCTGGCACCCGGGTTCCGAAATGGAATGGTACAGATGCTCAGAGGGTGAAAGTTGCGTATGGGAACGAGATAGTCAGGTTCCGG ATGTCGAAAAACTGGGGATTCACAGACTTGTTGCTCGAGATAGCAAGGCGGTTTGGCATAGAGGACATGGGCAGGTTCGATGTGAAGTACTTGGATGACG ACTCGGAGTGGGTTCTGTTAACTTGCGACGAAGATGTCGAGGAATGTGTGGAAGTCTGCAGAGGTTCGCAAAGCCAAACTATCAAGCTTTTGCTCCAGGT TTCTTCTCGATGCCTTTCATGA
AA sequence Show only first row Show all	>Lus10016018 pacid=23154445 polypeptide=Lus10016018 locus=Lus10016018.g ID=Lus10016018.BGIv1.0 annot-version=v1.0 MDGSSWQSGMLLGSLADTSMDFDYMDELLLDGCWLETTDGSDFFNPAAPSDQFAATFHPSTVLSPAVDINNVDVSAGTSQRNTEEEGKQMSVFDKAGVSG RENDDGTAEGSGFSQRWWIGRKPNPIPGSTVKDRLVGAIGSIRDLIKDKDALIQIWVPTDSRMGRRVLTTFDQPFAVDGSSQRLANYRDISINYQFPAEE GGDSKDFAGMPGRVFLGKVPEWTPDVRFFRNDEYPRVDHARQYNVCGTLAVPVFEQHSKVCLGVIEIVTTRQEVKYQSELEKISKALEAVDLRSSETPST QSMKSRDIAYQAALPEIQQVLKSACETHNLPLAQTWVPCIQQGKGGSRHSDENYFHCVSTVDQACFVSDTQIKGFHEACSEHHLLKGQGVAGRAFTTNEP CFSSDVTLYSKTEYPLSHHARMFGLCAAVAIRLRSVHTGAADFVLEFFLPAGCRTPEEQEKMLNSLSVIIQHVCQTLRVVTDKELEEEADSVVFPHVDLT DVITVPSAEKGMELLETSPDDKKGGIENDGEFGVGGFSCTIEGKQVDRKRTKAEKKITLDVLRQHFAGSLKDAAKSLGVCPTTLKRICRQHGISRWPSRK LKKVGHSLQKLQVVMDSVQGASGALHIRSFYTNFPELGSPQGSKSCSPLPVSKLDQNPEPSATPPDATAKSTSSSSCSQGSSSSHSLSSGSQQQQQSATE FAVLGEESEQKPLLDQSATNGLVKRVRSEARLRISGEVEAAAAKVTLARAQSHQSLAEEQANLGNRIHQLAKSGTRVPKWNGTDAQRVKVAYGNEIVRFR MSKNWGFTDLLLEIARRFGIEDMGRFDVKYLDDDSEWVLLTCDEDVEECVEVCRGSQSQTIKLLLQVSSRCLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76350		NLP5	Plant regulator RWP-RK family ...		Lus10016018 [exp]	0	1
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10029574 [exp]	26.3	0.7814
AT1G05270			TraB family protein (.1)		Lus10015104 [exp]	46.5	0.7755
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10003964 [exp]	48.5	0.7819
AT1G04300			TRAF-like superfamily protein ...		Lus10021218 [exp]	57.4	0.7751
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10040933 [exp]	64.4	0.7475
					Lus10003602 [exp]	71.2	0.7703
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10015510 [exp]	120.9	0.7368
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10009675 [exp]	122.7	0.7060
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	139.3	0.7183
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	160.1	0.7351

Compare expression of checked genes

Lus10016018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.