Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38350 1515 / 0 Patched family protein (.1.2) AT1G42470 1446 / 0 Patched family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009600 [exp] 1792 / 0 AT4G38350 1726 / 0.0 Patched family protein (.1.2) Potri.005G251800 [exp] 1786 / 0 AT4G38350 1738 / 0.0 Patched family protein (.1.2) Potri.009G167000 [exp] 1546 / 0 AT4G38350 1679 / 0.0 Patched family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0322 [flax] [poplar] RND_permease PF02460 [flax] [poplar] Patched Patched family CL0322 [flax] [poplar] RND_permease PF12349 [flax] [poplar] Sterol-sensing Sterol-sensing domain of SREBP cleavage-activation
Representative CDS sequence Show only first row Show all	>Lus10016019 pacid=23154406 polypeptide=Lus10016019 locus=Lus10016019.g ID=Lus10016019.BGIv1.0 annot-version=v1.0 ATGCTGCTAAAAAGTTATGTGAATTTTGCTTACTTGCAGGCCTTTCTATTGGCATCTGCAGTTGCTGCAGATAGGTCTGAAACTCGATTACTTTTAACCT CCAATGGCACAATTGGGGGAAGACATTCTGAAGAGTATTGTGCAATGTATGACATCTGTGGATCTCGTGAAGATGGGAAAGTGCTCAACTGTCCGTACGG ATCCCCATCTGTCAAGCCTGATGATCTGCTGTCACAAAAGATCCAAAGTCTGTGCCCAACGATTACAGGCAATTTGTGTTGTACAGAAGGTCAGTTTGAC ACATTGCGCTCCCAAGTTCAACAGGCAATTCCTTTTCTTGTTGGCTGCCCGGCATGCTTGAGAAATTTTTTGAATCTGTTCTGTGAGCTTACCTGTTCTC CGCATCAAAGTTTGTTTATTAATGTAACTTCTGTATCCAAGGCCAAGAACAATTCGACTGTGGACGGGATTGATTTCTATATAACCGATGTGTTTGGTGA AGGTCTATTTAACTCTTGCAAAGATGTGAAGTTTGGTACTATGAACACACGAGCTATTGACTTCATTGGTGCTGGTGCTCGTAACTTTGAAGAGTGGTAT GCCTTCATTGGTAAAAAAGCATCTCAAAACACACCAGGTTCACCATATGCCATTCAGTTCAAGTCAACTGCTCCCAGTTCTTCTGGAATGAGACCTACGA ATGTCTCAACCATATCTTGTGCTGATACTTCATTGGGATGTTCCTGCGGTGATTGCCCTTTGGCTAATGGTTGCACAAATGCAGTACCTCCTCAAGAGCT TGCGGAAGGTTCATGTTCAGTGAAAATTGGCTCTCTTAAGGCTAAATGCGTTGACTTTGCTCTAACCATCCTCTATGTTTTATCGCTCTCAACTCTCCTG GGGTGGGGATTCCTCCACCGGAAGAGAGAAAATAACCAAACTTCTAGAATGAAGCCATCGTCAAATGTAATGGACGGTAGTGATATCCATCCGGCCCATA CCCAGAAAGATGAGAATCATCCGATTCAGGAGACCCTGTCAGCTGCTGACAAGTATAATTCTGATAGTCTTGTTCTTGCGTACTATCATCAGGTTCCTGA AGGTTCTCCCCAAAGCGGGAGGAGGGTTCAGCTTTCAATTGTCCAAGGATATCTGTCCAAGTTTTACAGGATTTATGGGACTTGGGTTGCCAGAAATCCA ATCCTTGTGCTGATTGTGTCATTAGCTGCAATTCTTCTTCTCTGTTTAGGTCTTGTCCGGTTTAAGGTGGAAACAATGCCGGAGAAGCTATGGGTTGGAC CAGGGAGCAAGGCTGCAGAAGAGAAACGATTTTTTGACACTCATCTGCAACCATTTTACAGAATCGAACAGCTGATTATAGCAACTGTTCCAGATCCTAG AGATGGAAAGTCTCCGAGTATTCTGACGGCGAACAACATTAAGTTACTCTTTGATATGCAAAAAAAGGTTGATGGCATCCGCGCCAATTATTCTGGGTCA ATGATTTCGCTGACTGATATTTGCATGAAACCTCTGGGTGAGGATTGTGCAACACAAAGTGTTTTGCAGCACTATACCTCTGCAGATGATTGTAGGAGTG CCTTCAAAGCGCCTCTTGATCCAAATACCGCTTTAGGAGGTTTCTCGGGGAACAACTACTCAGAAGCCTCTGCATTCTTAATAACCTACCCTGTAAACAA TTTCATTGAGGAAAAGGGGAACAAAACTGAAAGGGCTATTGCTTGGGAGAAATCCTTCATTGAGTTGGCAAAGAATGAATTGTTGCCCATGGCACATTCC CAAAATCTCACTCTCTCCTTTTCTTCCGAGAGCTCAATTGAGGAGGAACTAAAGAGAGAAAGCACTGCTGATGTTGTAACTATAGTGATTAGCTATCTTG TGATGTTTGCCTACATATCTCTTACATTAGGCGATACACCCCATTTATCTTCTTTCTACATTTCATCGAAGGTATTACTTGGTCTTGCTGGAGTTCTGCT TGTCATGCTCTCAGTTCTTGGGTCAGTGGGTTTTTTCAGCGCTATTGGAGTGAAGTCCACTCTTATCATCATGGAAGTGATTCCTTTTCTTGTTTTAGCT GTTGGAGTAGATAACATGTGCATATTGGTGCATGCTGTTAAGAGGCAACCTCTGGAGCTGCCTATCGAGGGACGGATTAGCAATGCACTTGTAGAAGTTG GACCATCAATAACACTTGCCAGTCTGGCCGAGGTTTCAGCTTTTGCTGTTGGAAGTTTCATTCCCATGCCAGCATGCCGTGTGTTCTCCATGTTTGCTGC GCTGGCTGTTTTCTTGGACTTCTTGCTGCAAGTCACTGCTTTTGTTGCGTTGATAGCGTTTGACTTTCTTCGGTCAGAGGATAGGAGAGTAGATTGTATT CCTTGTATAAAGATTTCGTCACCAAATGCAACCTCTGACAAAGGTACCAATGGCATTGGTGGAGGAAGAAGACCCGGATTGCTAGCTCGATACATGAAGG AGGTACATGCACCAATACTTGGTATTTGGGTGGTGAAAATAGCTGTGATCGCCATCTTTGCTGCAATTTCAGTCGCTAGCATTGCACTATCCACCAGGGT TGAACCTGGTTTGGAACAACAAATTGTTCTTCCACGGGACTCCTATCTTCAGGGATACTTTAATAACATCTCAGAATATCTGAGAATTGGTCCACCTCTA TACTTTGTCGTGAAGAACTATAATTATAGTTTGGAGTCAAACCAAACAAACCAGTTATGCTCCATCAGTCAATGTGATTCGAACTCCCTCTTAAATGAGA TTGCAAGAGAATCCTTAAGACCAGAATCGAGTCACATTGCTAAGCCAGCTGCTTCATGGCTGGATGATTTCCTAGTATGGATATCTCCTGAAGCATTTGG TTGTTGCCGGAAGTTCACCAATGGAACTTATTGCCCGCCCAATGATCAGCCTCCTTGTTGTGCTTCTGGGTCAGGGTCATGTGGTTTGGGTGGCTTATGC AAAGACTGCACCACGTGCTTCCGTCACTCTGATCTAAACAATGAACGCCCATCTACGAAACAATTTACGGAGAAACTTCCATGGTTCCTCGATTCATTGC CTTCTGCTGATTGTGCCAAAGGTGGTCATGGTGCATACACAGGCAGTGTGGAGCTGCAAGGATATGAAAATGGGGTGATTCAAGCATCATCTTTCCGCAC ATATCATACTCCCCTTAACAAGCAGATTGACTATGTCGACTCATTGAGAGCAGCTCGAAAGTTCACTTCCAGGATGTCCGAATCTTTGAAGATGGAGATC TTTCCATATTCCGTGTTTTACATGTTTTTTGAGCAATACCTTGATATATGGAGTACTGCCTTGATCAACCTTGCCATAGCCATCGGAATCATCATGTTGG TATTGGCAATGATTGTGGTTGATCTCCTGGGTGTGATGGCAATCCTCAACATTCAACTAAACGCAGTTTCGGTTGTTAACCTTGTTATGTCAGTGGGCAT AGCTGTTGAGTTTTGTGTACATATAACCCATGCTTTCACAGTCAGCATCGGGGACAAAGAGCAGCGAGTAAAGGAGGCTCTGGGAACAATGGGGGCTTCC GTGTTCAGTGGCATCACTCTAACAAAGCTGGTTGGAGTCATTGTTCTTTGCTTCTCAAGAACTGAAGTTTTTGTGGTTTACTACTTCCAAATGTACCTGG CATTGGTCCTTCTTGGCTTCCTGCACGGCTTAGTTTTCCTCCCGGTAGTATTGAGCATCTTTGGGCCACCGTCAAGAAGTAAGCTTGTCGAGAAGCAAGA AGATCGGCCTTCAGTTTCGTTGCGGCCATGA
AA sequence Show only first row Show all	>Lus10016019 pacid=23154406 polypeptide=Lus10016019 locus=Lus10016019.g ID=Lus10016019.BGIv1.0 annot-version=v1.0 MLLKSYVNFAYLQAFLLASAVAADRSETRLLLTSNGTIGGRHSEEYCAMYDICGSREDGKVLNCPYGSPSVKPDDLLSQKIQSLCPTITGNLCCTEGQFD TLRSQVQQAIPFLVGCPACLRNFLNLFCELTCSPHQSLFINVTSVSKAKNNSTVDGIDFYITDVFGEGLFNSCKDVKFGTMNTRAIDFIGAGARNFEEWY AFIGKKASQNTPGSPYAIQFKSTAPSSSGMRPTNVSTISCADTSLGCSCGDCPLANGCTNAVPPQELAEGSCSVKIGSLKAKCVDFALTILYVLSLSTLL GWGFLHRKRENNQTSRMKPSSNVMDGSDIHPAHTQKDENHPIQETLSAADKYNSDSLVLAYYHQVPEGSPQSGRRVQLSIVQGYLSKFYRIYGTWVARNP ILVLIVSLAAILLLCLGLVRFKVETMPEKLWVGPGSKAAEEKRFFDTHLQPFYRIEQLIIATVPDPRDGKSPSILTANNIKLLFDMQKKVDGIRANYSGS MISLTDICMKPLGEDCATQSVLQHYTSADDCRSAFKAPLDPNTALGGFSGNNYSEASAFLITYPVNNFIEEKGNKTERAIAWEKSFIELAKNELLPMAHS QNLTLSFSSESSIEEELKRESTADVVTIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLAGVLLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA VGVDNMCILVHAVKRQPLELPIEGRISNALVEVGPSITLASLAEVSAFAVGSFIPMPACRVFSMFAALAVFLDFLLQVTAFVALIAFDFLRSEDRRVDCI PCIKISSPNATSDKGTNGIGGGRRPGLLARYMKEVHAPILGIWVVKIAVIAIFAAISVASIALSTRVEPGLEQQIVLPRDSYLQGYFNNISEYLRIGPPL YFVVKNYNYSLESNQTNQLCSISQCDSNSLLNEIARESLRPESSHIAKPAASWLDDFLVWISPEAFGCCRKFTNGTYCPPNDQPPCCASGSGSCGLGGLC KDCTTCFRHSDLNNERPSTKQFTEKLPWFLDSLPSADCAKGGHGAYTGSVELQGYENGVIQASSFRTYHTPLNKQIDYVDSLRAARKFTSRMSESLKMEI FPYSVFYMFFEQYLDIWSTALINLAIAIGIIMLVLAMIVVDLLGVMAILNIQLNAVSVVNLVMSVGIAVEFCVHITHAFTVSIGDKEQRVKEALGTMGAS VFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSIFGPPSRSKLVEKQEDRPSVSLRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38350			Patched family protein (.1.2)		Lus10016019 [exp]	0	1
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	6.5	0.7657
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10016576 [exp]	10.5	0.7671
AT1G27750			nucleic acid binding (.1)		Lus10007756 [exp]	14.9	0.7378
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10010061 [exp]	19.3	0.7605
AT1G73430			sec34-like family protein (.1....		Lus10015940 [exp]	19.7	0.7607
ATCG00120		ATCG00120.1, AT...	ATP synthase subunit alpha (.1...		Lus10004894 [exp]	21.4	0.7521
AT5G42620			metalloendopeptidases;zinc ion...		Lus10016304 [exp]	22.2	0.7122
AT5G19730			Pectin lyase-like superfamily ...		Lus10009997 [exp]	23.7	0.7317
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10009173 [exp]	28.3	0.7484
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032827 [exp]	30.2	0.7479

Compare expression of checked genes

Lus10016019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.