Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76360 467 / 6e-163 Protein kinase superfamily protein (.1) AT2G17220 421 / 8e-146 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G07570 399 / 2e-137 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 395 / 1e-135 APK1B protein kinase 1B (.1.2.3) AT4G35600 390 / 8e-134 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT5G02290 381 / 8e-131 NAK Protein kinase superfamily protein (.1.2) AT5G15080 374 / 2e-126 Protein kinase superfamily protein (.1) AT2G02800 366 / 3e-124 Kin2, APK2B protein kinase 2B (.1.2) AT3G01300 366 / 2e-123 Protein kinase superfamily protein (.1) AT3G28690 357 / 1e-121 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012256 [exp] 706 / 0 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10030743 [exp] 487 / 9e-172 AT1G76360 483 / 2e-169 Protein kinase superfamily protein (.1) Lus10024512 [exp] 436 / 2e-151 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10013223 [exp] 424 / 6e-149 AT1G76360 400 / 8e-139 Protein kinase superfamily protein (.1) Lus10008015 [exp] 424 / 5e-147 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10023000 [exp] 408 / 7e-141 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 407 / 2e-140 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 417 / 2e-136 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10023794 [exp] 389 / 3e-134 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251900 [exp] 496 / 3e-175 AT1G76360 483 / 1e-168 Protein kinase superfamily protein (.1) Potri.002G009400 [exp] 468 / 2e-163 AT1G76360 461 / 1e-159 Protein kinase superfamily protein (.1) Potri.007G062700 [exp] 436 / 2e-151 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G100900 [exp] 429 / 5e-149 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 421 / 7e-146 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 412 / 3e-142 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.016G094300 [exp] 389 / 9e-134 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 383 / 3e-131 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 382 / 9e-131 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.004G123800 [exp] 380 / 4e-129 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10016020 pacid=23154359 polypeptide=Lus10016020 locus=Lus10016020.g ID=Lus10016020.BGIv1.0 annot-version=v1.0 ATGGGAAACTGCCTCGCAACTCCTCCGGAAAACCACGACCACAACCCCCACAGCACCACCGCCAAGCCAGAAACTAGTGCGTCAAACGGCGTCGTTGGGT GTATCAATGGATCAAGAAGCTGCATCAGTAACAGAACCGAATCGGCGTCGTCGGGCAACAAGAGTAGTAGTGACGTCGTTATTAAACCGAGCTTGCCGAG CCTGAAGATATTCAAGCTGGTAGAGTTGAAGAGCGCGACGAGGAATTTCAGGCCGGACATGGTGTTAGGGGAAGGCGGGTTCGGGAAGGTGTTTAAAGGC TGGATTGACGAGAAGACGTTTGCTCCGTCTAATGTTTCCGCCGGGTTTCCCGTCGCCGTCAAGCGCTCTAACCACGGCAGCTCTCAGGGTCTCGAGGAAT GGCAGTGTGAAGTGAGGTTTCTGGGAAAATTCTCGCACCCAAATCTGGTGAAGCTGTTGGGTTATTGTTGGGAACAGAATCACTTCTTCCTCGTCTATGA ATTCATGCAGAAAGGCAGCTTGGAACACCACCTCTTCAAAAAAGGTGCAGAGCCACTACCATGGGAGATCCGCCTGAAGATCGCTATAGGCGCTGCGCAA GGCCTGGCTTTCCTCCATTCCTCCGAGAAGAGTGTCATCTACCGCGACTTCAAAGCTTCCAATATTCTCTTAGACAAGGATTTCAACGCCAAGCTTTCGG ACTTCGGGCTGGCGAAATTCGGCCCAATAAACGGGAAATCTCACGTGACCACCCGGGTCATGGGCACCCACGGATACGCAGCGCCGGAGTACGTGGCGAC CGGACACCTGTACGTCAAGTCCGACGTGTACGGGTTCGGAGTCGTCCTTCTGGAGATGCTAACGGGCCTACGAACCGTGGACACAAATCGGCCCAGCGGC GAGTACAAGCTCGTGGAATGGGCCAAGCCTTCGCTGTCCAACAAGAGAAAGCTCAAGAAGCTAATGGACCCAAGGCTCGAAGATCAATACCCATTAAGCG CTGCGCTGCAAGCGGCCCAGCTGATACTGCAGTGCTTGGAGACCGATCCGAAGATCAGGCCTTCAATGGAGGATGTTTTGGAGAGGTTGAAGAAGATAAG CGAGATCAATGAAATTCCTGAGGAGGGTAGACGTGGAGGCAGAGGCCGACGTGGCAGTCAAGGTGTTAACCATTCCGGACACGGCGGAAATTTAAATGGG CCTTTAGCCCAATACTCAGGTGGTAGGTAG
AA sequence Show only first row Show all	>Lus10016020 pacid=23154359 polypeptide=Lus10016020 locus=Lus10016020.g ID=Lus10016020.BGIv1.0 annot-version=v1.0 MGNCLATPPENHDHNPHSTTAKPETSASNGVVGCINGSRSCISNRTESASSGNKSSSDVVIKPSLPSLKIFKLVELKSATRNFRPDMVLGEGGFGKVFKG WIDEKTFAPSNVSAGFPVAVKRSNHGSSQGLEEWQCEVRFLGKFSHPNLVKLLGYCWEQNHFFLVYEFMQKGSLEHHLFKKGAEPLPWEIRLKIAIGAAQ GLAFLHSSEKSVIYRDFKASNILLDKDFNAKLSDFGLAKFGPINGKSHVTTRVMGTHGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTGLRTVDTNRPSG EYKLVEWAKPSLSNKRKLKKLMDPRLEDQYPLSAALQAAQLILQCLETDPKIRPSMEDVLERLKKISEINEIPEEGRRGGRGRRGSQGVNHSGHGGNLNG PLAQYSGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76360			Protein kinase superfamily pro...		Lus10016020 [exp]	0	1
AT5G03330			Cysteine proteinases superfami...		Lus10001404 [exp]	6.3	0.6139
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041668 [exp]	13.1	0.6076
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10015656 [exp]	17.3	0.6117
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10031096 [exp]	51.7	0.5441
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Lus10004701 [exp]	62.0	0.5206
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10037561 [exp]	78.2	0.5085
AT1G55170			unknown protein		Lus10015628 [exp]	91.7	0.5082
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10033125 [exp]	117.7	0.4900
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	131.1	0.4764

Compare expression of checked genes

Lus10016020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.