Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20650 507 / 2e-180 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G76370 473 / 5e-167 Protein kinase superfamily protein (.1) AT5G18610 451 / 3e-156 Protein kinase superfamily protein (.1.2) AT5G02800 438 / 2e-153 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G13160 433 / 3e-150 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G24790 411 / 4e-143 Protein kinase superfamily protein (.1) AT3G07070 412 / 1e-142 Protein kinase superfamily protein (.1) AT4G13190 396 / 1e-136 Protein kinase superfamily protein (.1) AT3G20530 395 / 3e-136 Protein kinase superfamily protein (.1) AT1G07870 394 / 2e-135 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012249 [exp] 626 / 0 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10030741 [exp] 558 / 0 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10012814 [exp] 453 / 2e-157 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 453 / 3e-157 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 447 / 1e-155 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 437 / 6e-153 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 428 / 5e-149 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 427 / 7e-149 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 426 / 2e-148 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252000 [exp] 525 / 0 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.002G009300 [exp] 524 / 0 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 452 / 6e-157 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 448 / 3e-155 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 446 / 3e-155 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 438 / 7e-153 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 432 / 5e-151 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 434 / 1e-150 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 429 / 5e-150 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 412 / 6e-143 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016021 pacid=23154402 polypeptide=Lus10016021 locus=Lus10016021.g ID=Lus10016021.BGIv1.0 annot-version=v1.0 ATGAAGAAGTGCTTCTCTTGCATTAATCATCGCCGCAGCGATGTTAAAATCGACATCGTCGACCCCCCTGGCTCCTCCAAATCCCGGATTTCCGATTCCG ATCCCTCTGGTAGCGGGAAGAAGAAAGTTCTTGAGCTGAATGTCAATAGCGCTCGCAGTTTCTCGTTACGTGAGCTTGCGGCTGCCACCCAGAATTTCAG GGATGCGAATCTGATCGGAGAAGGAGGGTTTGGTAGGGTTTATAAAGGCCGCCTGGAAACTGGCGAGTTTGTTGCGGTGAAACAATTGAACCAAGATGGT ATGCAGGGGAATCAAGAATTCATCGTCGAAGTTCTTATGTTGAGTCTCTTACACCACCCTAATCTCGTCACCTTGACTGGCTACTGTGCTGCCGGCGACC GGAGACTGTTGGTTTACGAGTATATGCCCATGGGAAGTCTGGAAACTCATCTGTTTGATGCGGATCCTGGTAAAGAGCCGCTTAGTTGGGGAACACGGAT GAAGATTGCCGTTGATGCAGCGAGAGGCCTTCAACACCTCCATTGCAAGACAACTCCACCGGTTATTTACCGCGACCTGAAATCGGCCAACATCTTGCTA GACAACGATTTCCACGCGAAGTTATCAGATTTCGGGCTAGCGAAACTAGGGCCAACGGGGGACAACACCCACGTTTCTACCAGGGTTATGGGAACGTACG GCTACTGTGCCCCAGAGTATGCCATGACTGGGAAATTGACTCTCAAATCCGACATCTATAGCTTCGGTGTCCTTCTGTTGGAGCTTATTACTGGACGGAA GGCTATGGATTATAAAAGAAGGCAAGGGGAGCAGAACCTGGTATCTTGGTGTCGGCCATTTCTGAAAGATCCGAAGAAGTACTTACAAATGGCCGATCCA AAGCTGCAAGGACGATACCCTCGCAGGTGCTTAACCTACGCTGTTGCCATAACCGAGATGTGTCTGCATGAGGAAGCACATTTCCGGCCACTCATCGGGG ACATAGTGGTGGCCCTGGAGTACTTGGAAGCACAGAGTCTGCAGCGGGGTGCAGAACACAAGGTCGAAAGAAAGGCACAAAGCGACATAGTATTACCCAC CTCAAATCCGGAAGTAAATGAGCAGAAGCAGCTATCAATGCCCTTGTCAAAGTCAGGAAGAGAGGCTAGCCATCAGGAGTCAGTTGTTTCCACTGCCACT TCTTCTTTCTGA
AA sequence Show only first row Show all	>Lus10016021 pacid=23154402 polypeptide=Lus10016021 locus=Lus10016021.g ID=Lus10016021.BGIv1.0 annot-version=v1.0 MKKCFSCINHRRSDVKIDIVDPPGSSKSRISDSDPSGSGKKKVLELNVNSARSFSLRELAAATQNFRDANLIGEGGFGRVYKGRLETGEFVAVKQLNQDG MQGNQEFIVEVLMLSLLHHPNLVTLTGYCAAGDRRLLVYEYMPMGSLETHLFDADPGKEPLSWGTRMKIAVDAARGLQHLHCKTTPPVIYRDLKSANILL DNDFHAKLSDFGLAKLGPTGDNTHVSTRVMGTYGYCAPEYAMTGKLTLKSDIYSFGVLLLELITGRKAMDYKRRQGEQNLVSWCRPFLKDPKKYLQMADP KLQGRYPRRCLTYAVAITEMCLHEEAHFRPLIGDIVVALEYLEAQSLQRGAEHKVERKAQSDIVLPTSNPEVNEQKQLSMPLSKSGREASHQESVVSTAT SSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10016021 [exp]	0	1
					Lus10037427 [exp]	2.4	0.7721
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10031505 [exp]	3.7	0.7806
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10042817 [exp]	4.2	0.7535
AT1G12390			Cornichon family protein (.1)		Lus10030270 [exp]	6.0	0.7628
AT2G40020			Nucleolar histone methyltransf...		Lus10040211 [exp]	9.6	0.7564
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10025736 [exp]	18.0	0.7538
					Lus10002061 [exp]	19.8	0.7498
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10039460 [exp]	24.7	0.7445
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	24.8	0.7419
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10006597 [exp]	26.2	0.7418

Compare expression of checked genes

Lus10016021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.