Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37420 471 / 2e-161 Domain of unknown function (DUF23) (.1) AT5G40720 286 / 2e-89 Domain of unknown function (DUF23) (.1) AT1G27200 281 / 1e-87 Domain of unknown function (DUF23) (.1) AT3G27330 282 / 3e-85 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012255 [exp] 845 / 0 AT4G37420 437 / 2e-147 Domain of unknown function (DUF23) (.1) Lus10013221 [exp] 634 / 0 AT4G37420 469 / 9e-160 Domain of unknown function (DUF23) (.1) Lus10030740 [exp] 454 / 6e-156 AT4G37420 292 / 3e-92 Domain of unknown function (DUF23) (.1) Lus10036676 [exp] 297 / 5e-94 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1) Lus10010731 [exp] 292 / 5e-92 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1) Lus10014568 [exp] 278 / 1e-86 AT3G27330 573 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10030815 [exp] 277 / 4e-86 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10013291 [exp] 276 / 1e-85 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10032118 [exp] 271 / 8e-84 AT3G27330 570 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252100 [exp] 568 / 0 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1) Potri.010G039000 [exp] 278 / 1e-86 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.001G336766 [exp] 266 / 4e-82 AT3G27330 637 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G192000 [exp] 266 / 1e-81 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10016022 pacid=23154382 polypeptide=Lus10016022 locus=Lus10016022.g ID=Lus10016022.BGIv1.0 annot-version=v1.0 ATGAATTCGACCTCAGTTGATCATAATCTAGCAGCGCCTTCTTCCGTTGGCCGCCGTGGAGATTATCTGATCGAACCCACTTCGATTCTGTTCCCTGATT GGCAAGTTCTCGTGATCGTCTCCAGAGATATCATTATTGATCAGTCGATTTCAGGGGAGGAATTTCTGTGCCTCTATCCAAACAGAGCGAGTTCGCCAGC AAGATTCTCGGGAGTTCTTCCCTCGACGAATCAGTCGATTTTCAAGTGCTTGCTGCCGGACAGGTGCCGGCGGCAGAAGGAGATGAAACAGCCGGTGCTG GTGAGATCGTCTTTCTCGTCCTCGGTAGTATCTTTTCCTCATCCGGTGGAATCGCTGCGGTGGCTGCTGAGGTGGACGTATCTCGCTTACGAGTCTTTCT CCACTGAAACCGACGTCGTTCTGTTCGTCAAAGGCGTCAACAATAAGCAAGGATTCAATCGTCCTGCTCACGAGCTCAATTGCGTGTTCTTCAGCCATGA GAACGATGCCGTGAAGACGACAACAACCGCCGTCACAAGCTCGGAGCAACAGGTTTTTCGTTGCCGTCATCCGGATATGACGGCGTTAGGTCTTAACGCA ACGGGAATCAAAATCACGCTGGAAATCTCGGAGTCCAGGCTCAACGCGAAAACGATTGTTCCTTCGGTGGCGTACTACATGCCTTTTCGGCAGCGTGCGA TAGTGGACCCGGCGCAGCAGCCAAAGAAGTTGGAAATCTGCGCCGGGACGATGGTTTACAACGCCGCCAAGTTCCTGAGGGAGTGGGTGATTTACCATTC CGGAATCGGTGTCGAGAAGTTTTTCTTATACGACAACGACAGCGACGACGACATTGAATCAATAGTCGGACAGTTGAATCAGGAAGGGTATAAGATCGAG ACGGTGCCGTGGAGATGGCCGAAGTCGCAGGAGGCAGGATTCTCCCACTTGGCCGTCTACGCCAAGGGAACTTGCGATTGGATGATGTACATCGACGTGG ACGAGTTCGTGTTCTCGCCGCGGTGGAGCTCCGCCGCGCATCCGTCGAATCGGATGCTGAAATCCCTAATTCCGAGTCACCGCCGGGTGGGGCAAGTTTC GATTCGGTGCAACGAATTCGGGCCGTCGGGTCGGGAATCGCACCCGGAGGAAGGGGTTACGCAAGGTTATGACTGCAGGAGGAAATTCGACAACCGGCAC AAGTCGATCGTGCTGTTGGAGGCGGTCGACTACTCGCTGCTGAACGCGGTGCACCATTTCCGGCTCGGCGGCGGAGGGGAGTACAAGTGGAAGAAGGTGA AGTTGGAGACGGCGGTGGTGAACCACTACAAGTACCAGGCGTGGTCGGAGTTCAGGGCGAAGTTCAGGAGGAGAGTGTCGGCGTACGTAATTGACTGGAA GAAGGCGGTGAATCCTGCGTCGAAGGACAGGGCGCCGGGGCTAGGGTTCCGGGAGGAGAAGCCCGACGATTGGGAGCGGCGGTTTTGTGAGGTGAAGGAC CAGCGGCTGCAGTGGCTGGCGCGGAAATGGTTCGGCGACAGGGAGAAAATGGCGTGGCAAAGATGA
AA sequence Show only first row Show all	>Lus10016022 pacid=23154382 polypeptide=Lus10016022 locus=Lus10016022.g ID=Lus10016022.BGIv1.0 annot-version=v1.0 MNSTSVDHNLAAPSSVGRRGDYLIEPTSILFPDWQVLVIVSRDIIIDQSISGEEFLCLYPNRASSPARFSGVLPSTNQSIFKCLLPDRCRRQKEMKQPVL VRSSFSSSVVSFPHPVESLRWLLRWTYLAYESFSTETDVVLFVKGVNNKQGFNRPAHELNCVFFSHENDAVKTTTTAVTSSEQQVFRCRHPDMTALGLNA TGIKITLEISESRLNAKTIVPSVAYYMPFRQRAIVDPAQQPKKLEICAGTMVYNAAKFLREWVIYHSGIGVEKFFLYDNDSDDDIESIVGQLNQEGYKIE TVPWRWPKSQEAGFSHLAVYAKGTCDWMMYIDVDEFVFSPRWSSAAHPSNRMLKSLIPSHRRVGQVSIRCNEFGPSGRESHPEEGVTQGYDCRRKFDNRH KSIVLLEAVDYSLLNAVHHFRLGGGGEYKWKKVKLETAVVNHYKYQAWSEFRAKFRRRVSAYVIDWKKAVNPASKDRAPGLGFREEKPDDWERRFCEVKD QRLQWLARKWFGDREKMAWQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37420			Domain of unknown function (DU...		Lus10016022 [exp]	0	1
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10018018 [exp]	2.8	0.8238
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	3.2	0.8210
AT4G17250			unknown protein		Lus10008508 [exp]	9.6	0.8059
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Lus10017603 [exp]	10.2	0.7661
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Lus10007818 [exp]	14.7	0.7591
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	15.6	0.8022
AT1G13990			unknown protein		Lus10037142 [exp]	16.9	0.7855
					Lus10020716 [exp]	17.2	0.7468
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016317 [exp]	19.0	0.7729
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	19.7	0.8011

Compare expression of checked genes

Lus10016022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.