Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38260 267 / 2e-89 Protein of unknown function (DUF833) (.1) AT1G20680 104 / 2e-26 Protein of unknown function (DUF833) (.1), Protein of unknown function (DUF833) (.2) AT1G20730 98 / 5e-24 Protein of unknown function (DUF833) (.1) AT1G20740 93 / 4e-22 Protein of unknown function (DUF833) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012251 [exp] 395 / 2e-140 AT4G38260 242 / 4e-80 Protein of unknown function (DUF833) (.1) Lus10016024 [exp] 385 / 2e-136 AT4G38260 239 / 4e-79 Protein of unknown function (DUF833) (.1) Lus10012253 [exp] 324 / 4e-112 AT4G38260 208 / 1e-66 Protein of unknown function (DUF833) (.1) Lus10026547 [exp] 288 / 7e-98 AT4G38260 305 / 2e-104 Protein of unknown function (DUF833) (.1) Lus10013833 [exp] 285 / 1e-96 AT4G38260 305 / 3e-104 Protein of unknown function (DUF833) (.1) Lus10012254 [exp] 208 / 4e-67 AT4G38260 97 / 4e-24 Protein of unknown function (DUF833) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252250 [exp] 394 / 1e-139 AT4G38260 285 / 9e-97 Protein of unknown function (DUF833) (.1) Potri.004G206300 [exp] 333 / 1e-115 AT4G38260 306 / 5e-105 Protein of unknown function (DUF833) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05742 [flax] [poplar] TANGO2 Transport and Golgi organisation 2
Representative CDS sequence Show only first row Show all	>Lus10016023 pacid=23154408 polypeptide=Lus10016023 locus=Lus10016023.g ID=Lus10016023.BGIv1.0 annot-version=v1.0 ATGTGCATAGCAGCATTCCTGTGGCAAGCTCACCCGCTCTACCCTCTGCTTCTCTTGCACAACAGAGATGAATACCACAAAAGGCCTACATCACCAGTTG AGTGGTGGACCGACATCGATATAGCAGGCGGAAGAGATGAGCTGGCCGGAGGGACATGGCTGGCTTGCTCCAGAGGAGGCAGAGTCGCTTTCCTCACTAA TGTCTTGGAGCTACACGAACGCCCCGATGCCAACTCCAGAGGCGAGCTCCCTCTTCTTTTCCTCCAGAGCTGTAAGAGTCCTAGGGAATTCGCGGAGGGT CTGGTTAAGAGTATCCACCAGTACAACGGGTTCAACTTGATCGTCTCCGACATTTCGTCCAACACCATGGTCTACATCACCAACCGTCCTAAAGGCGAAG CAGGTTCCATCTTCCGTGATGTCTCCCCTGGCCTCCATGTTCTCTCCAATGCAAACCTCGACTCTCCTTGGCCTAAGGCGCAGAAGTTGGGCTTGGGTTT CAAAGAACAGCTGCTCAAGTATGGGGAAGGGGAGATTCCATTGAAAGAAATAGCAAAGAAGCTGATGAGGGACAGAGTTAAAGCTGACAAGAACAGATTG CCTGGTGTTTGTTCTGTTGATTGGGAGCTTGCTCTGAGCTCCATTTTCGTTGAAGCCGACACTCCACTACTGGGAAGGTGTGGCACGAGGAGCACTATTG CTTTAGCTGTGACAAGAAATGGAGAAGTTAGCTTTGATGAGAGCTACTTGGAAGATGGGACATGGAAGGATAAGACAATCAAATACCGAATTCAGAACAT CCATCACAAGCTCAAACACTCCAGCAATTGA
AA sequence Show only first row Show all	>Lus10016023 pacid=23154408 polypeptide=Lus10016023 locus=Lus10016023.g ID=Lus10016023.BGIv1.0 annot-version=v1.0 MCIAAFLWQAHPLYPLLLLHNRDEYHKRPTSPVEWWTDIDIAGGRDELAGGTWLACSRGGRVAFLTNVLELHERPDANSRGELPLLFLQSCKSPREFAEG LVKSIHQYNGFNLIVSDISSNTMVYITNRPKGEAGSIFRDVSPGLHVLSNANLDSPWPKAQKLGLGFKEQLLKYGEGEIPLKEIAKKLMRDRVKADKNRL PGVCSVDWELALSSIFVEADTPLLGRCGTRSTIALAVTRNGEVSFDESYLEDGTWKDKTIKYRIQNIHHKLKHSSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	0	1
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	2.8	0.9994
AT2G40370		LAC5	laccase 5 (.1)		Lus10007532 [exp]	3.6	0.9664
AT5G13660			unknown protein		Lus10005963 [exp]	4.0	0.9994
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	4.5	0.9889
					Lus10006164 [exp]	4.9	0.9994
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	5.7	0.9994
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10019510 [exp]	5.7	0.9626
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	6.3	0.9994
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	6.9	0.9712
					Lus10001790 [exp]	6.9	0.9994

Compare expression of checked genes

Lus10016023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.