Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38260 239 / 4e-79 Protein of unknown function (DUF833) (.1) AT1G20680 98 / 3e-24 Protein of unknown function (DUF833) (.1), Protein of unknown function (DUF833) (.2) AT1G20730 83 / 7e-19 Protein of unknown function (DUF833) (.1) AT1G20740 83 / 1e-18 Protein of unknown function (DUF833) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012251 [exp] 491 / 2e-178 AT4G38260 242 / 4e-80 Protein of unknown function (DUF833) (.1) Lus10012253 [exp] 412 / 3e-147 AT4G38260 208 / 1e-66 Protein of unknown function (DUF833) (.1) Lus10016023 [exp] 385 / 2e-136 AT4G38260 267 / 1e-89 Protein of unknown function (DUF833) (.1) Lus10026547 [exp] 246 / 2e-81 AT4G38260 305 / 2e-104 Protein of unknown function (DUF833) (.1) Lus10013833 [exp] 244 / 7e-81 AT4G38260 305 / 3e-104 Protein of unknown function (DUF833) (.1) Lus10012254 [exp] 163 / 1e-49 AT4G38260 97 / 4e-24 Protein of unknown function (DUF833) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252250 [exp] 319 / 1e-110 AT4G38260 285 / 9e-97 Protein of unknown function (DUF833) (.1) Potri.004G206300 [exp] 273 / 2e-92 AT4G38260 306 / 5e-105 Protein of unknown function (DUF833) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05742 [flax] [poplar] TANGO2 Transport and Golgi organisation 2
Representative CDS sequence Show only first row Show all	>Lus10016024 pacid=23154461 polypeptide=Lus10016024 locus=Lus10016024.g ID=Lus10016024.BGIv1.0 annot-version=v1.0 ATGAGAGTGTTTACAGGATCTTGTAACTTGCCTACATCAGCAGTTGAGTGGTGGACCGACATCGATATAGTCGGAGGAAGAGATGAGGTTGCCGGAGGGA CATGGATGGCTTGTTCCAGAGGAGGCAGAGTGGTTTTCCTCACTAACGTTATGGAGCTCCACGAGCGCCCTGATGCCAAGTCCCGTGGGGAGCTCCCTCT TCTTTTCCTCCAGAGCTCCAAGGCTCCAAGGGAATTTGCAGAGGGAATGGCAAAGGAGGCCGATCAATACAACGGCTTTAACCTGATTGTTGCTGACATC TTGTCAAACACCATGGTGTATGTCTCCAACCGGGATAAATGCAAAGAAGCCTTCATCGTCCAGGATGTTTCGCCTGGCATCCATGTTCTTTCCAATGCAC ACCTCGACTCTCCTTGGCCCAAGGAGCAGAAGCTGCGTCAGGGTTTCAAAGAAAAGCTGGTTAAACATGGAGATGGCGAAATCAATTTAAAGGAGATAGC AAATAAGCTGATGAGGGACAGATCCAAAGCTGAGAAGAACAGGCTGCCTGGCATTTGTTCTGCAGATTGGGAGTATGCTCTAAGCTCCATTTTCGTTGAA GTCAACACCCCACTGGGACGGTGTGGCACAAGGAGCACTATTGCTTTGGCTGTGGAAAGAAGTGGGGTAGTTAGCTTTCATGAGTTCTACCTGGAAGATG GAACTTGGAAGGAGAAAACTATCAATTACCGGATCCAAAGCAACCAAAAGATCATACCGCTCCACAGTTGA
AA sequence Show only first row Show all	>Lus10016024 pacid=23154461 polypeptide=Lus10016024 locus=Lus10016024.g ID=Lus10016024.BGIv1.0 annot-version=v1.0 MRVFTGSCNLPTSAVEWWTDIDIVGGRDEVAGGTWMACSRGGRVVFLTNVMELHERPDAKSRGELPLLFLQSSKAPREFAEGMAKEADQYNGFNLIVADI LSNTMVYVSNRDKCKEAFIVQDVSPGIHVLSNAHLDSPWPKEQKLRQGFKEKLVKHGDGEINLKEIANKLMRDRSKAEKNRLPGICSADWEYALSSIFVE VNTPLGRCGTRSTIALAVERSGVVSFHEFYLEDGTWKEKTINYRIQSNQKIIPLHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38260			Protein of unknown function (D...		Lus10016024 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	1.4	0.9553
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	2.2	0.9566
AT1G10140			Uncharacterised conserved prot...		Lus10007729 [exp]	2.6	0.9413
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036725 [exp]	5.0	0.9438
AT2G26230			uricase / urate oxidase / nodu...		Lus10008952 [exp]	8.9	0.9340
AT1G76360			Protein kinase superfamily pro...		Lus10012256 [exp]	9.0	0.9357
AT5G58750			NAD(P)-binding Rossmann-fold s...		Lus10040675 [exp]	9.8	0.9171
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10021088 [exp]	10.4	0.9506
					Lus10027915 [exp]	10.4	0.9457
					Lus10012067 [exp]	11.5	0.9115

Compare expression of checked genes

Lus10016024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.