Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35550 145 / 2e-42 HD HB-4, WOX13, ATWOX13 WUSCHEL related homeobox 13 (.1) AT1G20700 142 / 4e-42 HD ATWOX14, WOX14 WUSCHEL related homeobox 14 (.1) AT1G20710 117 / 2e-32 HD WOX13B, WOX10 WUSCHEL related homeobox 13B, WUSCHEL related homeobox 10 (.1) AT5G45980 70 / 1e-13 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT2G33880 66 / 2e-12 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) AT5G59340 60 / 1e-10 HD WOX2 WUSCHEL related homeobox 2 (.1) AT1G46480 59 / 2e-10 HD WOX4 WUSCHEL related homeobox 4 (.1) AT3G03660 59 / 4e-10 HD WOX11 WUSCHEL related homeobox 11 (.1.2) AT5G17810 58 / 7e-10 HD WOX12 WUSCHEL related homeobox 12 (.1.2) AT5G46010 55 / 1e-09 HD Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012250 [exp] 389 / 2e-136 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10040447 [exp] 139 / 2e-40 AT4G35550 203 / 4e-65 WUSCHEL related homeobox 13 (.1) Lus10023561 [exp] 138 / 3e-40 AT4G35550 201 / 3e-64 WUSCHEL related homeobox 13 (.1) Lus10016569 [exp] 65 / 5e-12 AT5G59340 121 / 6e-33 WUSCHEL related homeobox 2 (.1) Lus10005282 [exp] 65 / 5e-12 AT5G45980 184 / 2e-54 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) Lus10040840 [exp] 62 / 4e-11 AT5G59340 110 / 7e-29 WUSCHEL related homeobox 2 (.1) Lus10024808 [exp] 58 / 1e-09 AT1G46480 195 / 7e-62 WUSCHEL related homeobox 4 (.1) Lus10042007 [exp] 55 / 2e-08 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10018011 [exp] 54 / 2e-08 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252800 [exp] 196 / 6e-63 AT4G35550 196 / 8e-63 WUSCHEL related homeobox 13 (.1) Potri.002G008800 [exp] 194 / 4e-62 AT4G35550 203 / 1e-65 WUSCHEL related homeobox 13 (.1) Potri.005G101800 [exp] 172 / 5e-53 AT4G35550 303 / 2e-104 WUSCHEL related homeobox 13 (.1) Potri.009G029200 [exp] 66 / 7e-13 AT5G59340 171 / 2e-52 WUSCHEL related homeobox 2 (.1) Potri.004G051600 [exp] 65 / 5e-12 AT2G33880 200 / 1e-60 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.011G061400 [exp] 64 / 7e-12 AT2G33880 273 / 3e-89 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.001G237900 [exp] 61 / 6e-11 AT5G59340 166 / 2e-50 WUSCHEL related homeobox 2 (.1) Potri.002G124100 [exp] 60 / 8e-11 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1) Potri.014G025300 [exp] 59 / 1e-10 AT1G46480 226 / 5e-75 WUSCHEL related homeobox 4 (.1) Potri.012G047700 [exp] 56 / 6e-09 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10016026 pacid=23154393 polypeptide=Lus10016026 locus=Lus10016026.g ID=Lus10016026.BGIv1.0 annot-version=v1.0 ATGAGGGAGCAGCAGCAGCCGGAGAGAAGGTTACAATTGGGAAATGGAGGAGGAGGAGAAGAAGGAGGAACAATTTCCAACAATGGCGCTGCTTTGATTG GGAACGGATTAGGAGTGAAGGTGATGACGGATGAACAGATGGAGATGCTTCGGAAACAAATCTCTGTTTATTCCGCCATTTGCGACCGTCTCGTCCAGAT GCACACCTCTTTAGCTCTCAATCGCCACGAATTTCCTGGCATGCTGCAATATGGTGATCCCTTGTCAGCCTGTGGTTCATCCAAGATCCCTTCGAGGCAA AGATGGGCGCCAAAGCAGTCACAGCTTCAAATCCTGGAGCGGATTTTCTCCGAGTGCAACTCGAATCCAGGGAAGGAGAGAATCAAGGAGATAACTGTTG AGCTCTCGAAATACGGCCACGTGAGGGAGAGCAGTGTTTATAACTGGTTTCAGAACAGGAGGGCTCGTTGCAAGAGGAAGCAATCAGCACCAACACCCAG AACGGGGAATTTTGATGTCGAAGCTGCTGCGAGGGTGGTCGACCGTGCTGCTGCTGCTGCTGCTAAACAGAAGATCCCAGAGGATGATGATAATCACAAC TCCCCACTTATCGTCGACCAGTTGTACTTCCACACTCCTGAGATTGGGATTGACCAACTGATTGGCAAATTGGAGGTTTGTGAAGGATTCAATTTATATT ACCCGGAGCAGCAAAACGGGCCGTCCTGA
AA sequence Show only first row Show all	>Lus10016026 pacid=23154393 polypeptide=Lus10016026 locus=Lus10016026.g ID=Lus10016026.BGIv1.0 annot-version=v1.0 MREQQQPERRLQLGNGGGGEEGGTISNNGAALIGNGLGVKVMTDEQMEMLRKQISVYSAICDRLVQMHTSLALNRHEFPGMLQYGDPLSACGSSKIPSRQ RWAPKQSQLQILERIFSECNSNPGKERIKEITVELSKYGHVRESSVYNWFQNRRARCKRKQSAPTPRTGNFDVEAAARVVDRAAAAAAKQKIPEDDDNHN SPLIVDQLYFHTPEIGIDQLIGKLEVCEGFNLYYPEQQNGPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10016026 [exp]	0	1
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10015372 [exp]	3.2	0.7651
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10029471 [exp]	4.7	0.7616
AT1G06320			unknown protein		Lus10038213 [exp]	5.3	0.7277
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10020769 [exp]	10.7	0.7549
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10023798 [exp]	13.0	0.7572
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10019164 [exp]	16.4	0.7569
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Lus10034400 [exp]	26.1	0.7047
AT4G20310			Peptidase M50 family protein (...		Lus10001219 [exp]	26.4	0.7265
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10003920 [exp]	31.9	0.7304
AT3G59060	bHLH	PIF5, PIL6	PHYTOCHROME-INTERACTING FACTOR...		Lus10029805 [exp]	33.4	0.7197

Compare expression of checked genes

Lus10016026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.