Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20720 920 / 0 RAD3-like DNA-binding helicase protein (.1) AT1G20750 745 / 0 RAD3-like DNA-binding helicase protein (.1) AT1G79950 303 / 5e-86 RAD3-like DNA-binding helicase protein (.1) AT1G03190 140 / 9e-34 ATXPD, UVH6 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) AT2G05635 115 / 1e-29 DNA repair DEAD helicase RAD3/XP-D subfamily protein (.1) AT1G79890 102 / 7e-22 RAD3-like DNA-binding helicase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012249 [exp] 1989 / 0 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10037532 [exp] 276 / 2e-77 AT1G79950 1010 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10011460 [exp] 269 / 2e-74 AT1G79950 1049 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10011447 [exp] 172 / 1e-43 AT1G79890 1036 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10014662 [exp] 141 / 5e-34 AT1G03190 1402 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) Lus10037548 [exp] 82 / 2e-15 AT1G79890 645 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10000652 [exp] 64 / 4e-10 AT1G03190 533 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G008700 [exp] 1184 / 0 AT1G20720 1164 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.001G180200 [exp] 295 / 2e-83 AT1G79950 1042 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.001G182600 [exp] 163 / 1e-40 AT1G79890 947 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G054000 [exp] 137 / 9e-33 AT1G03190 1410 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06733 [flax] [poplar] DEAD_2 DEAD_2
Representative CDS sequence Show only first row Show all	>Lus10016027 pacid=23154395 polypeptide=Lus10016027 locus=Lus10016027.g ID=Lus10016027.BGIv1.0 annot-version=v1.0 ATGGCGGCTACTACTAGTAAATCACAGTCTCCGGCGGCCCAAAACCGTAGCTCCAATTCCAAAAGGGCTTACTACGTCAGCGGGATCTCAGTGGAGTTTC CTTACCAGCCGTATGGAACGCAGCTCGCATACATGGGCAAAGTCATTTCCACGCTTGAGCGAGCTCAGAGGGAAGGCCACTCCCACGCTTTGCTCGAGTC TCCAACCGGCACTGGCAAATCTCTATCGCTGCTCTGCTCAACTCTCGCATGGCAGCAGACCCAGAAGCTGAAGAATCTTTACGCCAATCTCACCCACTCC AAACCCGATCCTCAGGCGATGAGCGATCCTCTCGCTCATGGCGGCGGATTCGTTCCTGAAACCCAGACTTCGAGAAATTTGCCTCCGTCGATGGTAGAGC CAGCTAATCCAGCACCGGTGGTGAAAAAGAAAAAACCAGCACCTACCATCTTCTATGCATCGAGGACACATGCACAAATTTCTCAACTGGTGCGCGAGTA TAAGAAAACTACATATCGTGTGCCTATGACAGTATTGCTGAAGAATCTCTACGCCAACCTCACCCACTCCAAACCCGACCCTCAGGCGATGGCCTATCCT CTCGCTCATGGCGGCGGATTCGTTCCTGAAACCCAGACTTCGAGAAATTTGCCTCCGTCGATGGTAGAGCCAGCTAATCCAGCACCGGTGGTGAAAAAGA AAAAACCAGCACCTACCATCTTCTATGCATCGAGGACACATGCACAAATTTCTCAACTGGTGCGCGAGTATAAGAAAACTACATATCGTGTGCCTATGAC AGTATTGGCTTCGAGGAAACATTACTGCACAAACAAACTTGTAATTCAGACGGGAAATATTGATGAAGAATGTAAGCTGCTAATGAAGGATATTGAAGAT GGAGGTGGGTGTTCATACTTCAAAAATGTGCATAAGCTCAAGGCTCATTCATCACTTCAAAAGGGAGGTTGCTACGAGGTCCATGATATCGAAGATCTTG TGAAAGTTGGAAAGGCTGTTAAAGGTTGTCCATATTACGCTGCCCGCTCAATGGCAGATGATGCGCAGTTGGTTTTTTGTCCCTACAATTACGTAATTAA TCCAATCATTCGAGGTGCGATGGAAATCGATATCAAAGGAGCCATCATTGTACTCGATGAAGCCCACAATATTGAAGACATTGCTCGTGACGCTGGTAGT GTGGATCTAGAAGAAGATGTTTTACAGAAATTACAAACGGAGTTGGAAGAACTTTGCTCAAGTGATGGATTAACATACCAGCCATTGTACGAGATGACAC AGGGCCTAATAAGTTGGATGGATCAGAAGAAAAGTACGCTTGAAATGCGAGACTTTCAGCAGTACTATTCTTGTTGGAGCGGTGATCAAGCTTTAAGGGA GCTTCAAGAAGCTAATATCTCACAGCAGTATTTCCCTATCTTGTTAGAGTGTGCCCTAAAGGCTATTAAAGCTGCAACTGATGTGGAGTCAGAATTGCCT CTTTTAAGCGGCATGTCAGTGACAATATTAGAAGGCTTGTTCTCTGCGCTCACATATTTTTTTGCAAGAAATGGATCCCATATTTCTGATTACCAGCTTG TTGTGCAACGAAAAGTCAAGAAAGACTCAAAAAACGATGTTGGTGGCTGGACACATATCTTTAGCTTGTGGTGCTTGAATCCGGCTGTTGTGTTCAAGGA CATTGCTAATCTATCCTTGTCAGTCATCCTAACATCCGGGACTCTGTCACCTATGAATTCCTTCTCATCTGAGCTTGGAGTGACCTTTGGAAATTGTCTA GAGGCCCCACATGTGGTTAATATTAAATCACAGGTGTGGACTGCTGTTATATCCTCTGGTCCTGGAAACTATCCCTTAAATGCCAGTTTCAAGACTGCAG GTGCATTTTCCTTCCAGGATGCACTGGGGAAATCTTTGGAGGAAATTTTCAAAGTTGTTCCTGCTGGTTCCCTTGCCTTCTTCCCAAGTTATAATTTACT GGAAAAACTGTCCAAGCGGTGGCGTGAAACAGGTCAATGGGCGAGACTTAATGCGCAGAAGTCCCTCTTTGTCGAGCCAAGAGGAGGAACACAAGAGGAT TTTGATTCTCTTCTAAAGCGTTACTACAATTCAGTTTCCCGGCATAGCAAAGTTCCTGTTGGAACTAAGAAAAGGAACAAAAAACCAGATCTCAAGAACA CGAAGACACCTGAGCCTCCCATGACTTCTAAGAAAGACGGAGGTGCTTTTCTTGCCGTTTGCAGAGGAAAGGTCTCTGAAGGAATAGACTTTTCAGATGA TAATGCCCGAGTAGTTAAGAAATACAACGACAGTTACAAATCAAGTAAGAACCTTCTAAGTGGAAGTGAGTGGTACTGCCACCAAGCTTTCCGAGCACTG AATCAAGCTGCAGGACGTTGCATACGGCATAAGTCTGACTATGGAGCAATCATCTTCTTAGATGAACGTTTTCAGGAAGACAGGAACACAGCATACGTTT CCAAGTGGCTCAGACAATCCATTCAACACTATAGAAGCTTTGATGAGTCACTTGAACGATTGAAATGCTTTTTCACAGACGCCAAGAATATAGTTGGTGA AACTACACCTACTCCAGTGCCAAATTATACGGTTAAGGAGGAGAAAGATACACCTAAAGATCTGGAGAATAGCTGTACTGGGGAAAGCACTCATAAATTG AGTGGACCTTGTTGCCGTGGACAGAAGCTAGTTGATGTACCAAAGTGTAGCCCCTCTGTGAACTTGGACTTCAAGCCTGAAGCCCAGCCAATCGTAATAG AAGACGACGACATTGAGAGTTGCCCAGTTACTGATCTAGAATGTAATTCTCCAATGGGCATAAGGTTTGATGATGCATTAACCATTGTCAAGGAAACTCC TGATATAGATGGAAATAGCCCAGAAAATTTATCTTCAGGTATGGATTATGGTTCAAGCATGATTGAACCCTCTTATGAGCTGACAACTCCCACAACAAGT CTCCAAGTCCAGGGTTCATCAATAGGCAGTCCCAAGAAAGTGTTCTCTATATCCACCTTCAGCCCGTCAGAAGAAGTTGAAACTTCTCTTATTCGAAGTG TTAATTCTCGCACCCAGAAAAGAAGGAAATTGGTGGACTCACCTTTGGTTCCTCCTTCAGATGATAACTCTGGTGTCTGCAATGTCACAACTTTGGGATG TGTCAGTTCCAAAAGAAGTCCTTTCTCTGGCTTGGACTTAAATGGCACGATGCAACGTTTATCTTTCGGTCCATCTGTGAGTAAAAACCTGAGAATTTCC TGCTTCCTTTGTGAAAAACCATTGGGTCGTCCCGAGAACGACCTTTTTGTTGAATGCTTGGCAACTTCGTCGTCAAAAGTTCATTTAGTGTCCCTTGCAA AGGACGGGTTGGGAAATGAAGCGGAGAATACTTCAACAAAGGTGCCTATTGTAGTAGCAGAAAGACTATCAGTCGAACATATGCTATGTAAAAGCGATCG AGAAGATGTTCCTGCTGAAGGAGTTTGGTGTGAGGAAGATGGATGTGTTTTCAAATCAATCTATTGTCCATTCTGCACGAAGCCCCATTGTCTTGGTGTT CAAGTCATGGCAACTGATTCATCAAATGTTCAGTTACTTAACAAGGTCAGTCGAGCTCGATAG
AA sequence Show only first row Show all	>Lus10016027 pacid=23154395 polypeptide=Lus10016027 locus=Lus10016027.g ID=Lus10016027.BGIv1.0 annot-version=v1.0 MAATTSKSQSPAAQNRSSNSKRAYYVSGISVEFPYQPYGTQLAYMGKVISTLERAQREGHSHALLESPTGTGKSLSLLCSTLAWQQTQKLKNLYANLTHS KPDPQAMSDPLAHGGGFVPETQTSRNLPPSMVEPANPAPVVKKKKPAPTIFYASRTHAQISQLVREYKKTTYRVPMTVLLKNLYANLTHSKPDPQAMAYP LAHGGGFVPETQTSRNLPPSMVEPANPAPVVKKKKPAPTIFYASRTHAQISQLVREYKKTTYRVPMTVLASRKHYCTNKLVIQTGNIDEECKLLMKDIED GGGCSYFKNVHKLKAHSSLQKGGCYEVHDIEDLVKVGKAVKGCPYYAARSMADDAQLVFCPYNYVINPIIRGAMEIDIKGAIIVLDEAHNIEDIARDAGS VDLEEDVLQKLQTELEELCSSDGLTYQPLYEMTQGLISWMDQKKSTLEMRDFQQYYSCWSGDQALRELQEANISQQYFPILLECALKAIKAATDVESELP LLSGMSVTILEGLFSALTYFFARNGSHISDYQLVVQRKVKKDSKNDVGGWTHIFSLWCLNPAVVFKDIANLSLSVILTSGTLSPMNSFSSELGVTFGNCL EAPHVVNIKSQVWTAVISSGPGNYPLNASFKTAGAFSFQDALGKSLEEIFKVVPAGSLAFFPSYNLLEKLSKRWRETGQWARLNAQKSLFVEPRGGTQED FDSLLKRYYNSVSRHSKVPVGTKKRNKKPDLKNTKTPEPPMTSKKDGGAFLAVCRGKVSEGIDFSDDNARVVKKYNDSYKSSKNLLSGSEWYCHQAFRAL NQAAGRCIRHKSDYGAIIFLDERFQEDRNTAYVSKWLRQSIQHYRSFDESLERLKCFFTDAKNIVGETTPTPVPNYTVKEEKDTPKDLENSCTGESTHKL SGPCCRGQKLVDVPKCSPSVNLDFKPEAQPIVIEDDDIESCPVTDLECNSPMGIRFDDALTIVKETPDIDGNSPENLSSGMDYGSSMIEPSYELTTPTTS LQVQGSSIGSPKKVFSISTFSPSEEVETSLIRSVNSRTQKRRKLVDSPLVPPSDDNSGVCNVTTLGCVSSKRSPFSGLDLNGTMQRLSFGPSVSKNLRIS CFLCEKPLGRPENDLFVECLATSSSKVHLVSLAKDGLGNEAENTSTKVPIVVAERLSVEHMLCKSDREDVPAEGVWCEEDGCVFKSIYCPFCTKPHCLGV QVMATDSSNVQLLNKVSRAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20720			RAD3-like DNA-binding helicase...		Lus10016027 [exp]	0	1
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	3.0	0.9145
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10003268 [exp]	4.5	0.9125
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10017491 [exp]	6.3	0.9200
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035991 [exp]	6.6	0.9144
AT4G16970			Protein kinase superfamily pro...		Lus10004357 [exp]	7.9	0.9159
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10019443 [exp]	9.5	0.8866
AT3G48540			Cytidine/deoxycytidylate deami...		Lus10022452 [exp]	10.2	0.8723
AT4G39380			unknown protein		Lus10033530 [exp]	15.0	0.8602
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	16.7	0.8927
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	17.3	0.9083

Compare expression of checked genes

Lus10016027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.