Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20760 684 / 0 Calcium-binding EF hand family protein (.1) AT1G21630 306 / 2e-87 Calcium-binding EF hand family protein (.1.2) AT4G05520 80 / 4e-15 ATEHD2 EPS15 homology domain 2 (.1.2) AT3G20290 77 / 2e-14 ATEHD1 EPS15 homology domain 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012248 [exp] 1632 / 0 AT1G20760 886 / 0.0 Calcium-binding EF hand family protein (.1) Lus10016689 [exp] 521 / 2e-166 AT1G21630 806 / 0.0 Calcium-binding EF hand family protein (.1.2) Lus10035983 [exp] 211 / 2e-58 AT1G21630 454 / 4e-147 Calcium-binding EF hand family protein (.1.2) Lus10035982 [exp] 157 / 1e-39 AT1G21630 410 / 3e-129 Calcium-binding EF hand family protein (.1.2) Lus10043181 [exp] 79 / 7e-15 AT3G20290 936 / 0.0 EPS15 homology domain 1 (.1.2) Lus10032563 [exp] 79 / 1e-14 AT3G20290 924 / 0.0 EPS15 homology domain 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G008600 [exp] 926 / 0 AT1G20760 825 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G253000 [exp] 863 / 0 AT1G20760 629 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G102200 [exp] 422 / 4e-129 AT1G21630 887 / 0.0 Calcium-binding EF hand family protein (.1.2) Potri.007G063200 [exp] 395 / 2e-119 AT1G20760 669 / 0.0 Calcium-binding EF hand family protein (.1) Potri.002G008300 [exp] 80 / 6e-18 AT1G20760 57 / 5e-11 Calcium-binding EF hand family protein (.1) Potri.011G022300 [exp] 83 / 3e-16 AT4G05520 876 / 0.0 EPS15 homology domain 2 (.1.2) Potri.001G356300 [exp] 74 / 2e-13 AT3G20290 938 / 0.0 EPS15 homology domain 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016028 pacid=23154425 polypeptide=Lus10016028 locus=Lus10016028.g ID=Lus10016028.BGIv1.0 annot-version=v1.0 ATGGCGAGCATGGATCAATTCGATGCTTACTTCAGAAGAGCAGATTTGGATGGCGACGGCAAGATCAGTGGAGCTGAGGCTGTTGGTTTCTTTCAAGGAT CCAATTTGCCCAAGCAAGTCCTTGCTCAGATATGGATGCATGCTGACCAGAGCCGCAGTGGCTTCCTTGGTCGCCAAGAGTTTTACAATGCTCTAAAGCT CGTGACGGTTGCACAGAGCAAGCGAGAACTGACCCCGGAGATTGTAAAGGCTGCTCTATATGGCCCTGCTGCAGCCAAAATCCCGGCACCACAAATTAAT CTTGCAGCAGTTCCTGCACCTCAAGTGCGTCCAATGGGTGCTGCTCCCCAAATGGGAATGCCGGGCTCCACTCCACAAGTGGGTATGCCCGGCTCTGCTC CAGCTCATACTCCTGGCATTAGACCGCAGGGTGTTCCAACCTCCGCTATGAGTCCCCATTACTTTCCTCCTCAACAACACCAGTTCATGAGACCAGCTCA GGGAATTCATCCTGTGTCTGGCCCTCGACCTCCTCAGGCAATTGCTCCAGTAGCTGCTCCTCGACCACCTCAGATGATTCCTCCTGCAGCTGCTCCTCAA TTTCCTCAGGCTAGCTTGATGGTTAGCTCTCAGCCTATGCCTACAAGTAACGCTTATCGTCCGCCCCTCCAACACATGGCTGGTGGTCCTTCTGGTTTTG GCACATCTAACTCAACTATCTCAACTGATTGGCTGGGTGGAAAAACGGGTGGACCTGCACCTGGTGCTGGCTCCAGAGGTGTAAGCCCAGCTTCGTTTTC TTCAGGATTGCAGCAACCAAGTCCAACTTCACTGTCCTCCCCTTCTACTGTTGGAGACTCCAAAGCTATAGTGCCTTCTGGCAGTGTGTCTGCAACTACC TCCTCATTTGGGGACGACATGTTTTCAGTGATGGCTTCTACAAAAAAGCAAGAACCTCCTAAGCCAACATATTCTGCTGCTAACGCACCTGCAGCATCTG CTCTGGCTCCTGTTTCTTCTTCCGTTCAAGCCCCTACCAAGTCCAATTCACTCGGTTCACTGCAGGATGCCTTTGCCATGCAATCTTTGGGGCGACTTCA ACGGGCGCAATCATTACCAACAACAGGACAGCAGGTTTCAACTTCAGGTCCTGCCTTACCTGCTTCACCTGGAACTTCAGTTGGACTAGCAAGTACCACA GACAACTCTCAGATTGTGTGGCCAAAGATGAAAGCAGCAGAAATTCAGAAGTACACAAAGGTATTCGTAGAAGTAGACACGGACAGAGATGGAAAGATTA CTGGTGAGCAAGCACGCACTCTTTTTCTAAGCTGGAGGTTACCAAGAGAGATTTTGAAGCAGGTCTGGGATTTATCTGATCAGGACAATGATAGCATGCT TTCTTTAAGGGAATTTTGCTTTGCTCTTTATTTAATGGAGCGATTCAGGGAAGGTCGTCCTCTGCCAGCTACCTTACCTCGTAGTGTGATGTTCGACGAG ACACTGATGTCAATGACAGGCCAACCTAAGGTGGGATATGGAAATGCTGCATGGGCTCCTGGTGCTGGTTTTGCTCAGCGACCAGAAACAGGCCTTCGAA CAGTTCCAGTAACAGGACCTCAGCATGATGTTGCTGCAGTATCCAGTCAGAGCAAGTCAGCAGCTCCTGTGCTGGATGACTCCTTTCTGAGGCATGAGAA TGGCGAGCAGAATTCTGCAAACTCGTTGGCGGAAGATGGAGCAACTACAGAGAAAAAGGCAATTTTTTCCTATCCTGATCTCTGTTCAATTGATATTTTC TTCTGTTCTGCTGAAGTTTTCTTTTCATTTCACCTTGAGCTACTTCTCAAGACAAAAACAACGACATCACCGAACATAATTAGTATCTTCAATTTCATGC AGGCAGAGAAGTTGATATTGGATTCCAGAGAGAAAATTGAGTACTACCGCAGTAAGATGCAGGATCTTGAAAGAAAGAAAGAGTTGCATCAAGCAATTGT TAACATGGAACAAGGTGGCAGTGCAGATGGCCTTCTTCAGGTCCGTGCAGATCGCATACAGTCAGATCTGGATGAATTAATTAAGGTCTTGGTCGAGCGT TCCAAGAAGCATAGTTTGGATATCAAGTCATCTGCCATGATTGAGCTTCCCTTTGGATGGCAACCTGGAATTCAGGAGGCTGCAGCTCCTTGGGATGAAG AATGGGATAAGTTTGAAGATGAAGGTTTTGCCAATGAGCTTACTATTGATGCGAAAAACGTTTCTGAAACCACCAATGGAAAGCCCAATGCTGTTCAGAA TGGGAAAGCATCATCAGATGGTAGTTTAACTCCTGATTCCTTGTACAATGGTGATGCAAAATCTGGGAACTTCAGGAATACTACCCATGAGCATACCCTT GAGGAGAACGAATCTGCATACACTCACAGTGAAGATGAATCGGCAAGAAGCCCCCAAGGCAGCCCTGCTGGAAGGATTACTCGTGAAAGGCCATCACAGG ACTTCTCTGATGTTTTTGCGAAGAGCACTATAGGAGATTCAGAAGAACATGGAAGTTTCGATGATCCGGCATGGGGTGCAGCATTTGACACTAATGACGA TGTGGATTCTGTATGGGGATTTAACCCAAGCACCAAGGACACTGATTCAGAGAAACATCAAGACTTCTTTGGTTCCCATGACGACTTTAGAATGAAGCCA ATCAGGACTTCAGGATCTCCAACCACGGACCATATGTCCCAGAAGAAGAGCATATTCTTCGAGGAATCCGTTGCTGGCTCTCCCATGTCCAGATATGCCA ACTCGCCAAGGTTTAGCGAAGCCGGTGACCAGTTTGACACCTTCTCCAGATTCGATTCCTTAAGCATGCATGAAAGCAGTGGGTTTTCGCCGCAGAAAGA AAAGCTTACCAGGTTCGACTCTATAAACAGCACCAAAGACTTTGGCGGGGGAGGCAGCGGGTACAACCGTTCATTTTCTTCTTTCGATGATGGCGACCTA TTCGGGTCTAGTGAGCCGTTTAAAGTTACCTCGTCGTCGGAACATCAGAGTCCTAAGAAAAGCTCGGACAATTGGAATGCTTTCTAA
AA sequence Show only first row Show all	>Lus10016028 pacid=23154425 polypeptide=Lus10016028 locus=Lus10016028.g ID=Lus10016028.BGIv1.0 annot-version=v1.0 MASMDQFDAYFRRADLDGDGKISGAEAVGFFQGSNLPKQVLAQIWMHADQSRSGFLGRQEFYNALKLVTVAQSKRELTPEIVKAALYGPAAAKIPAPQIN LAAVPAPQVRPMGAAPQMGMPGSTPQVGMPGSAPAHTPGIRPQGVPTSAMSPHYFPPQQHQFMRPAQGIHPVSGPRPPQAIAPVAAPRPPQMIPPAAAPQ FPQASLMVSSQPMPTSNAYRPPLQHMAGGPSGFGTSNSTISTDWLGGKTGGPAPGAGSRGVSPASFSSGLQQPSPTSLSSPSTVGDSKAIVPSGSVSATT SSFGDDMFSVMASTKKQEPPKPTYSAANAPAASALAPVSSSVQAPTKSNSLGSLQDAFAMQSLGRLQRAQSLPTTGQQVSTSGPALPASPGTSVGLASTT DNSQIVWPKMKAAEIQKYTKVFVEVDTDRDGKITGEQARTLFLSWRLPREILKQVWDLSDQDNDSMLSLREFCFALYLMERFREGRPLPATLPRSVMFDE TLMSMTGQPKVGYGNAAWAPGAGFAQRPETGLRTVPVTGPQHDVAAVSSQSKSAAPVLDDSFLRHENGEQNSANSLAEDGATTEKKAIFSYPDLCSIDIF FCSAEVFFSFHLELLLKTKTTTSPNIISIFNFMQAEKLILDSREKIEYYRSKMQDLERKKELHQAIVNMEQGGSADGLLQVRADRIQSDLDELIKVLVER SKKHSLDIKSSAMIELPFGWQPGIQEAAAPWDEEWDKFEDEGFANELTIDAKNVSETTNGKPNAVQNGKASSDGSLTPDSLYNGDAKSGNFRNTTHEHTL EENESAYTHSEDESARSPQGSPAGRITRERPSQDFSDVFAKSTIGDSEEHGSFDDPAWGAAFDTNDDVDSVWGFNPSTKDTDSEKHQDFFGSHDDFRMKP IRTSGSPTTDHMSQKKSIFFEESVAGSPMSRYANSPRFSEAGDQFDTFSRFDSLSMHESSGFSPQKEKLTRFDSINSTKDFGGGGSGYNRSFSSFDDGDL FGSSEPFKVTSSSEHQSPKKSSDNWNAF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20760			Calcium-binding EF hand family...		Lus10016028 [exp]	0	1
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10012303 [exp]	2.4	0.8803
AT2G07360			SH3 domain-containing protein ...		Lus10027588 [exp]	2.6	0.8815
AT1G31730			Adaptin family protein (.1)		Lus10037271 [exp]	6.5	0.8764
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	11.8	0.8421
AT1G04140			Transducin family protein / WD...		Lus10022852 [exp]	13.3	0.8490
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	13.5	0.8500
AT5G11490			adaptin family protein (.1.2)		Lus10022125 [exp]	13.7	0.8527
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10038067 [exp]	13.7	0.8539
AT1G31730			Adaptin family protein (.1)		Lus10035683 [exp]	15.0	0.8439
AT5G12370		SEC10	exocyst complex component sec1...		Lus10036398 [exp]	17.3	0.8747

Compare expression of checked genes

Lus10016028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.