Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33700 514 / 0 Protein phosphatase 2C family protein (.1) AT3G51470 440 / 2e-154 Protein phosphatase 2C family protein (.1) AT2G25620 311 / 2e-103 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT3G62260 292 / 6e-96 Protein phosphatase 2C family protein (.1.2) AT1G48040 266 / 5e-86 Protein phosphatase 2C family protein (.1) AT3G17250 267 / 9e-86 Protein phosphatase 2C family protein (.1) AT5G10740 147 / 2e-40 Protein phosphatase 2C family protein (.1) AT5G24940 143 / 2e-38 Protein phosphatase 2C family protein (.1) AT4G31750 138 / 1e-37 WIN2 HOPW1-1-interacting 2 (.1) AT1G43900 135 / 8e-36 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012244 [exp] 731 / 0 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 608 / 0 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 607 / 0 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008091 [exp] 319 / 1e-106 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10013124 [exp] 317 / 6e-106 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10038058 [exp] 304 / 1e-100 AT3G62260 442 / 4e-155 Protein phosphatase 2C family protein (.1.2) Lus10001682 [exp] 291 / 3e-95 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10009993 [exp] 289 / 6e-95 AT3G62260 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) Lus10037832 [exp] 274 / 5e-89 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G253700 [exp] 553 / 0 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 519 / 0 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 468 / 3e-165 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 463 / 3e-163 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 312 / 9e-104 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.018G033000 [exp] 306 / 2e-101 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G248400 [exp] 305 / 5e-101 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G059600 [exp] 305 / 6e-101 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 300 / 2e-99 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.002G190400 [exp] 282 / 4e-92 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10016030 pacid=23154370 polypeptide=Lus10016030 locus=Lus10016030.g ID=Lus10016030.BGIv1.0 annot-version=v1.0 ATGGCTGCCGGAACCGATTTCTCGCCTCCATTTGCTTTGCTAGAAGGCGGTGGTTACAATGCTAATTCTGGTAACAATAAGGATATTACCAGTAGAAATG TCTCGCCGCCGGCTGCGCAGAACCCCAACTCCGACGACAATTCAGAAGGGCTCAAGCAAATCCCCAATGGGAAACCTCCCCGGCACGTCTCTGTTTCTCG CCACGCCATCCTCGCCGCTGGCGATCTGGCAATGGATGTTGGGATTGTCGTCAATAAGTCGCCTACCGACGACAAGGCTGGTTATTTACCGGTTTTCCGG TCAGGGAGTTGCGCCGAAGAAGGACCCAAGCAGTACATGGAGGATGAACATGTCTGCATAGATGATCTCAATGAGCATCTCGGTTCCACTGCCAAATTAT CTTCATCTGGAGCTTTCTATGGGGTGTTTGATGGCCATGGTGGTACAGATGCAGCTTTGTTCGTGAGAAAGAACATATTGAGATTCATAGTTGAGGATTC CCAGTTTCCTATTTGCGTAGAGAAGGCCCTTAAGAGTGCTTTTCTGAAAGCTGATTTTGCATTTGCTGATGATGCTTCAGTTGACATTTCCTCCGGCACC ACCGCCATCACTGCCCTTATGTTTGAACGGACATTAATCATTGCGAATGCTGGGGATTGCCGCGCGGTGTTGGGAAGACGAGGTAGAGCGATCGAGATGT CCAAAGACCACAAGCCTAACTGCACGCCTGAAAAACTACGAATCGAGAAACTCGGCGGGGTTATCTACGACGGATACCTCAACGGACAGCTGTCAGTTTC GCGTGCACTCGGTGACTGGCACATGAAGGGTACTAAAGGCTCCGTATGCCCACTGAGCGCTGTGCCCGAGTTGCAAGGAACGAGCTTGACTGAGGAAGAT GAGTTCTTGATATTGGGGTGTGACGGCCTGTGGGATGTAATGAGTAGCCAGTGTGCGGTGACCATTGTCCGGAAAGAACTGATGATTCACAACGATCCCG AAAGATGTTCGAAGGAGTTGGTCAGGGAAGCTCTAAAGCGAAACACATGCGATAATCTAACTGCCGTAGTTGTATCCTTCTCGCGGGATCCACCACCCCG GATTGAGGTCCCTCATAGAAGAGTTCGACGAAGCATATCGCTGGAAGGTCTGAACTTGCTCAAGGGCGTGCTGGACGAAAACGAAAACTCTTGA
AA sequence Show only first row Show all	>Lus10016030 pacid=23154370 polypeptide=Lus10016030 locus=Lus10016030.g ID=Lus10016030.BGIv1.0 annot-version=v1.0 MAAGTDFSPPFALLEGGGYNANSGNNKDITSRNVSPPAAQNPNSDDNSEGLKQIPNGKPPRHVSVSRHAILAAGDLAMDVGIVVNKSPTDDKAGYLPVFR SGSCAEEGPKQYMEDEHVCIDDLNEHLGSTAKLSSSGAFYGVFDGHGGTDAALFVRKNILRFIVEDSQFPICVEKALKSAFLKADFAFADDASVDISSGT TAITALMFERTLIIANAGDCRAVLGRRGRAIEMSKDHKPNCTPEKLRIEKLGGVIYDGYLNGQLSVSRALGDWHMKGTKGSVCPLSAVPELQGTSLTEED EFLILGCDGLWDVMSSQCAVTIVRKELMIHNDPERCSKELVREALKRNTCDNLTAVVVSFSRDPPPRIEVPHRRVRRSISLEGLNLLKGVLDENENS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33700			Protein phosphatase 2C family ...		Lus10016030 [exp]	0	1
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10017673 [exp]	3.9	0.8839
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Lus10028226 [exp]	4.2	0.8815
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Lus10016906 [exp]	6.2	0.8707
AT1G09940		HEMA2	Glutamyl-tRNA reductase family...		Lus10042932 [exp]	9.5	0.8346
AT3G55140			Pectin lyase-like superfamily ...		Lus10030313 [exp]	12.5	0.8349
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10010262 [exp]	16.3	0.8405
AT1G60990			Glycine cleavage T-protein fam...		Lus10012692 [exp]	17.3	0.8165
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10039618 [exp]	20.6	0.7970
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	22.4	0.8219
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10029536 [exp]	22.5	0.8188

Compare expression of checked genes

Lus10016030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.