Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42540 1083 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT3G51480 888 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT2G17260 884 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT1G05200 852 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G32390 767 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G32400 709 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT4G35290 696 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G29120 413 / 1e-129 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 405 / 1e-126 ATGLR2.8 glutamate receptor 2.8 (.1) AT5G11210 394 / 1e-123 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012245 [exp] 1626 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 951 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10027171 [exp] 865 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039671 [exp] 855 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10026553 [exp] 813 / 0 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10026552 [exp] 808 / 0 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013837 [exp] 805 / 0 AT4G35290 1016 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10039672 [exp] 572 / 0 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10031560 [exp] 570 / 0 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G253800 [exp] 1283 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.002G007400 [exp] 1232 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.009G168300 [exp] 950 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.005G102600 [exp] 905 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.002G230000 [exp] 886 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.014G152200 [exp] 874 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.005G102700 [exp] 757 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.002G229900 [exp] 577 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.018G012600 [exp] 475 / 4e-153 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013200 [exp] 468 / 1e-150 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10016031 pacid=23154386 polypeptide=Lus10016031 locus=Lus10016031.g ID=Lus10016031.BGIv1.0 annot-version=v1.0 ATGAATGCAATCAAGGATCTTCTCCTTCTGTTTCTGTTCTTGAGGCTATTCCCAGTTGGCCACGGTGGAAATGGTACCTCCACTTCCAGGCCTAGTGTAG TAAACATTGGGGCCTTATTCACGTTTGAATCTTCCATTGGAAGAGTTGCTAAGATTGCCATAGAAGAAGCCGTCAAAGATGTGAATGCAAATTCCAGCGT CCTCCCTGGAACCACTCTTAAAGTGCAGATGGAGAACACTAATTGCAGTGGCTTCTTAGGCATGGTTGAAGCTTTGCAATTCATGGAGACTGATACAATA GCCATAATTGGCCCACAATCATCTGTAGTCGCCCACATCATATCCCATGTTGCAAACGAGCTCCAAGTTCCTCTCCTCTCATTTGCAGCAACTGATCCCA CTCTTAACTCCCTCCAGTTCCCCTTTTTCGTCAGGACGACACATAGCGACACTTTCCAAATGGCTGCAGTGGCCGAGATTGTAGATCATTACGGTTGGAA ACAAGTTACTGCCATCTATATAGACGATGACTATGGCCGGAACGGCTTATCAGCTCTGGGTGATAAGCTTGCCGAGAGACGCTGCAAGATTTCTTACAAG GTAGGCATTCCTCCTGAATCCAGTGTTAACAGCAACGACATAATGGATCTTCTTGTTAAAGTCGAAATGATGGAATCTCGAGTTATCGTGCTCCATGTAT ATCCTCAAAAGGGTCTTGAGGTTTTCTCCATGGCAAACTATCTTGGAATGATGGGAAATGGCTATTTATGGATAGCCCCAAAATATGCTTATGATTCTGT TTGGCTAGTTGCACACGCCATCGATGCATTCTTCAACCAAGGTGGTGTGATTTCATTCTCCAACGATTCGAGATTATCTGCAGGAGGAGACAGTAATCTT CATCTAGACGCTATGAGCATTTTCAACGATGGGAAATTTCTCTTAAAGAACATACTTCAGGGTGATCTTATTGGTTTGACTGGTCCTATCAAGTTTGGAT TGGACAAGTCTCTAAACCGCCCGGCTTATGATGTTATCAATGTGGTTGGAACCGGGTTTAGAAGGATTGGTTACTGGTCAAACTATTCTGGCTTATCAAC TATCCCTCCTGAGAGTCTTTACACGAGGCCACCAAATCGTTCAGTTGCGAACCAGCATCTATATAGTGTCATTTGGCCTGGTGAGACCTCGTCCAAGCCT CGTGGATGGGTTTTCCCCAACAACGGGAAGCTGTTAAGGATTGGAGTCCCGCTTCGAGTGAGCTACAAGGAGTTTGTATCGCCTGTTCGAGGAACATCTG ATAAGTTCCAAGGCTTTTGCATAGATGTGTTCACAGCAGCTGTGAACTTGTTGCAGTATCCTGTTCCTTATCAGTTTGTTCCTATTGGAGACGGGAAGAA GAACCCAAGCTACACAGACATTGTGAACTCAGTCTACACTGGCAGTCTGGATGCTGCGATTGGTGATATCGCGATTGTTACGAACAGAACAAAGATAGTA GACTTTTCGCAGCCATATGTGGCGTCTGGGTTGGTTGTGGTGGTGCCATTCAGGAAGATGAACACAGGTGCATGGGCTTTCCTTAGGCCGTTTAGTCCCC TTATGTGGATTGTCACAGGATGTTTCTTCCTAGCTGTTGGAATTGTTGTGTGGATTCTGGAACACAGGATCAACGATGAATTCAGGGGCCCTCCGAAAAG ACAAATCATAACTGTTCTATGGTTCAGCCTCTCAACTTTGTTCTTCGCCCACAGAGAGAACACAGTGAGCACACTTGGGAGGATGGTACTACTAATATGG CTCTTTGTGGTTCTCATAATCAACTCCAGTTACACAGCCAGCTTGACATCAATCCTCACAGTGCAGCAGCTGTTTTCTCCAATCAAAGGAATTGAAAGCT TGAAGAAAGGCAACGACCCTATCGGATACCAAACCGGTTCCTTTGCTGAATACTATCTAACAGAGGAGCTAGGAATAGCCAAATCTAGACTGGTTGAGCT TGGAACCCCTGAAAAATATGCTGAAGCCCTCCAAAAGGGCCCTAAGAATGGCGGAGTTGCTGCTGTCGTTGATGAACGACCCTACGTAGAGATTTTCCTG TCGTCCCAATGCAGCTTCAGAATCGTCGGTCAAGAATTCACGAAAAGCGGATGGGGATTTGCATTCCAAAGAGACTCTCCACTAGCTGTGGACATATCGA CCGCAATCCTGGAGCTATCAGAGAATGGAGATCTGCAGAGGATCCATGATAAGTGGCTGATGCAGACCAGTTGCAGCTCGGACACGACAGAGATCGAATC GGACAGGCTGCATCTGAAGAGCTTTGTCGGGCTGTTCCTAATATGTGGGGTGGCATGCTTTATAGCACTTGTGATATACTTTGCGCAGGTGATCCGGCAG CTGTATAGGTCCCAGCCTGCAGATGAAGCGTTGGAGTCTGGTCATGGAAGCTCGTCGCGATCTAGGAGCATCCATCGGCTGTTCTCAATAATGGACGAGA AGGAGGACATTTCGAAGAAGGGTAGTAAGAGAAGGAAGTTGGAGCGTTCGACGTCGGTTACTAGTAAGGAGAGTGAGCTTGGAAAGAATGGAAGAAGGAG TCGAGTGGATCCACCAAGACGTAGCAGTAGCATGAATGGGAATGGGATAAACCCTTGTGAGTAG
AA sequence Show only first row Show all	>Lus10016031 pacid=23154386 polypeptide=Lus10016031 locus=Lus10016031.g ID=Lus10016031.BGIv1.0 annot-version=v1.0 MNAIKDLLLLFLFLRLFPVGHGGNGTSTSRPSVVNIGALFTFESSIGRVAKIAIEEAVKDVNANSSVLPGTTLKVQMENTNCSGFLGMVEALQFMETDTI AIIGPQSSVVAHIISHVANELQVPLLSFAATDPTLNSLQFPFFVRTTHSDTFQMAAVAEIVDHYGWKQVTAIYIDDDYGRNGLSALGDKLAERRCKISYK VGIPPESSVNSNDIMDLLVKVEMMESRVIVLHVYPQKGLEVFSMANYLGMMGNGYLWIAPKYAYDSVWLVAHAIDAFFNQGGVISFSNDSRLSAGGDSNL HLDAMSIFNDGKFLLKNILQGDLIGLTGPIKFGLDKSLNRPAYDVINVVGTGFRRIGYWSNYSGLSTIPPESLYTRPPNRSVANQHLYSVIWPGETSSKP RGWVFPNNGKLLRIGVPLRVSYKEFVSPVRGTSDKFQGFCIDVFTAAVNLLQYPVPYQFVPIGDGKKNPSYTDIVNSVYTGSLDAAIGDIAIVTNRTKIV DFSQPYVASGLVVVVPFRKMNTGAWAFLRPFSPLMWIVTGCFFLAVGIVVWILEHRINDEFRGPPKRQIITVLWFSLSTLFFAHRENTVSTLGRMVLLIW LFVVLIINSSYTASLTSILTVQQLFSPIKGIESLKKGNDPIGYQTGSFAEYYLTEELGIAKSRLVELGTPEKYAEALQKGPKNGGVAAVVDERPYVEIFL SSQCSFRIVGQEFTKSGWGFAFQRDSPLAVDISTAILELSENGDLQRIHDKWLMQTSCSSDTTEIESDRLHLKSFVGLFLICGVACFIALVIYFAQVIRQ LYRSQPADEALESGHGSSSRSRSIHRLFSIMDEKEDISKKGSKRRKLERSTSVTSKESELGKNGRRSRVDPPRRSSSMNGNGINPCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10016031 [exp]	0	1
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040558 [exp]	2.4	0.8829
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	4.4	0.8876
AT5G17980			C2 calcium/lipid-binding plant...		Lus10010658 [exp]	6.3	0.8709
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006011 [exp]	6.5	0.8672
AT5G59480			Haloacid dehalogenase-like hyd...		Lus10016518 [exp]	8.1	0.8433
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	8.3	0.8773
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	8.8	0.8460
AT4G13600			Carbohydrate-binding X8 domain...		Lus10032601 [exp]	11.7	0.8651
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10005956 [exp]	11.8	0.8682
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040559 [exp]	13.7	0.8285

Compare expression of checked genes

Lus10016031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.