Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29360 315 / 8e-102 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G24318 305 / 7e-99 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 301 / 1e-97 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 302 / 2e-97 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 299 / 1e-96 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G34480 299 / 4e-96 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 297 / 2e-95 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 290 / 3e-93 O-Glycosyl hydrolases family 17 protein (.1) AT3G55430 287 / 3e-92 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 283 / 7e-90 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040294 [exp] 303 / 3e-98 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10008865 [exp] 300 / 3e-97 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 300 / 4e-97 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 298 / 2e-96 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10016539 [exp] 299 / 5e-96 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 298 / 6e-96 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 294 / 9e-95 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 295 / 2e-94 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040461 [exp] 294 / 2e-94 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G007300 [exp] 644 / 0 AT4G29360 339 / 1e-111 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.005G253900 [exp] 394 / 5e-135 AT5G56590 191 / 8e-56 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 306 / 1e-99 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 299 / 3e-96 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.009G115400 [exp] 297 / 6e-96 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G068600 [exp] 297 / 2e-95 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 295 / 5e-95 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 294 / 5e-95 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 293 / 4e-94 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G056000 [exp] 291 / 8e-94 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10016032 pacid=23154452 polypeptide=Lus10016032 locus=Lus10016032.g ID=Lus10016032.BGIv1.0 annot-version=v1.0 ATGGCTCTTTCTCTTCCCCTGCTCCTCCTCATTTCCCTCTTCCTCCTCCTCCGCCATTTCCCCACCGCCTCCGCCGTCGGAATCAACTACGGAACTCTCG GGAACAACCTACCTCCCCCCAAAAAAGTGGCACAGCTCCTCCAGTCAACCCTCATCGACAAGGTCAAAATCTACGACACAAACCCAGATATCCTCTCTGC CTTCTCCAACACCGGCATCGACTTAATCGTCGCCGTTGAAAACAACCTCCTCGCCAACCTCTCCGCCGACGTTCCCTCTGCTGACCGTTGGCTCTCCTCC CGAATCCTCCCTTTCCTCCCCGCCACATCCGTCGTCGCCGTCGCCGTCGGCAACGAGTACCTCACCACCGATCTCGACCACATGAACCCTAATTCCCTCC TCAAATCGATGCAGAACCTCCACTCCGCCCTCCAGTTCCGAGGCCTCGACCGGAAGATCAAGGTCACGACGCCGCACAGCATGGCCGTCCTCGCTTCCTC TTTCCCGCCTTCCTCCTCCACTTTCGCCGCCACGCTCATGCCCGTCATGACCTCGATCGTCGAGTTCCTCGCCGACACCGGCGCTCCTTTCATGATCAAT GCGTACCCTTACTTCGCCTACAGAGATAACCCTACCTCCGTCAATCTGCAGTACGCTTTGCTTGGGAATGCCACCACCGCCGGCGGCGGAGTCCGTGACC CAGCTGGTTATGTGTACAGCAATATGCTGGACGCCCAAATTGACGCTGTCAGGTCCGCCGTAGCCGCGCTGGGTTTCGGGAACAGGATTGACATTACGGT ATCGGAATCCGGATGGCCGTCGAAAGGCGATCCCGGAGAAAATGCAGCCACGCCGGCGAACGCCAAGACTTACAACACTAGGCTGATTGAACGTGCTCAG TCCAGCAAAGGCACTCCGATGAGTCCTAAAGCCAAGGTGGAGATATTCGTGTTCGCGCTGTTCAACGAGAACAAGAAAGAAGGGGGAGCGAGCGAGAGGA ACTTCGGGATATTCAACGGCGACGGATCCAAATCCTACCAAGTGGATCTGAGCTGCCAGTTCTGCAGCGGTTCCGGAGCCGATGATGAGCCCACCAAGAC AGCTGGCAGCAACAGCAACAACTTATTAGAGGCGAGGGGGGGGGGCCCGGCGGTGGGTGGGGTGCCGAGGCCCCCCGCCGACGAGAAGCTGCTGCAGTCG GTGCTGGACTTCTGCTGCGGCGGCGGCGGCGTCGACTGCAGAGAGGTGTCGGAGAGCGGTGATTGCTACGCGCCGGGAAACAAGCTCCACGCCCACGCGT CGTTTGCTATGAACGCTTATTACCAGATGCACGGGAGGAACTACTGGAATTGTGACTTCAAGGGCGCTGGCCTCGTTACCTTCAGTGATCCAAGTTATGG GAAATGCAGATATCCGCAGCAGTGA
AA sequence Show only first row Show all	>Lus10016032 pacid=23154452 polypeptide=Lus10016032 locus=Lus10016032.g ID=Lus10016032.BGIv1.0 annot-version=v1.0 MALSLPLLLLISLFLLLRHFPTASAVGINYGTLGNNLPPPKKVAQLLQSTLIDKVKIYDTNPDILSAFSNTGIDLIVAVENNLLANLSADVPSADRWLSS RILPFLPATSVVAVAVGNEYLTTDLDHMNPNSLLKSMQNLHSALQFRGLDRKIKVTTPHSMAVLASSFPPSSSTFAATLMPVMTSIVEFLADTGAPFMIN AYPYFAYRDNPTSVNLQYALLGNATTAGGGVRDPAGYVYSNMLDAQIDAVRSAVAALGFGNRIDITVSESGWPSKGDPGENAATPANAKTYNTRLIERAQ SSKGTPMSPKAKVEIFVFALFNENKKEGGASERNFGIFNGDGSKSYQVDLSCQFCSGSGADDEPTKTAGSNSNNLLEARGGGPAVGGVPRPPADEKLLQS VLDFCCGGGGVDCREVSESGDCYAPGNKLHAHASFAMNAYYQMHGRNYWNCDFKGAGLVTFSDPSYGKCRYPQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	0	1
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	2.2	0.8946
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005242 [exp]	2.4	0.8828
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005244 [exp]	2.8	0.8704
AT5G66770	GRAS		GRAS family transcription fact...		Lus10041740 [exp]	3.0	0.8816
AT2G40070			unknown protein		Lus10030402 [exp]	4.2	0.8671
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	4.9	0.8510
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10037939 [exp]	8.2	0.8342
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	8.5	0.8450
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	10.4	0.8417
AT4G19550			zinc ion binding;transcription...		Lus10006630 [exp]	10.6	0.8119

Compare expression of checked genes

Lus10016032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.