Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42970 705 / 0 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) AT1G12900 493 / 4e-174 GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) AT3G26650 490 / 7e-173 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) AT1G79530 295 / 4e-96 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (.1) AT1G16300 289 / 1e-93 GAPCP-2 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) AT3G04120 257 / 2e-82 GAPC1, GAPC-1, GAPC glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) AT1G13440 257 / 3e-82 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012243 [exp] 808 / 0 AT1G42970 759 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Lus10041502 [exp] 491 / 4e-173 AT1G12900 650 / 0.0 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) Lus10012591 [exp] 491 / 2e-172 AT1G12900 654 / 0.0 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) Lus10000872 [exp] 277 / 6e-89 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10009602 [exp] 276 / 1e-88 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10011375 [exp] 269 / 6e-87 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10006435 [exp] 269 / 6e-87 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10015826 [exp] 264 / 5e-85 AT3G04120 606 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10022332 [exp] 263 / 1e-84 AT1G13440 632 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254100 [exp] 711 / 0 AT1G42970 732 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G007100 [exp] 676 / 0 AT1G42970 690 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.014G140500 [exp] 468 / 4e-164 AT3G26650 622 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) Potri.002G220566 [exp] 466 / 2e-163 AT3G26650 614 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) Potri.010G172400 [exp] 280 / 4e-90 AT1G16300 618 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.008G083900 [exp] 275 / 2e-88 AT1G16300 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.012G094100 [exp] 270 / 1e-87 AT1G13440 580 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.001G335800 [exp] 261 / 5e-84 AT3G04120 585 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.015G091400 [exp] 259 / 3e-83 AT1G13440 578 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.010G055400 [exp] 256 / 3e-82 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00044 [flax] [poplar] Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL0063 [flax] [poplar] PF02672 [flax] [poplar] CP12 CP12 domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02800 [flax] [poplar] Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016033 pacid=23154458 polypeptide=Lus10016033 locus=Lus10016033.g ID=Lus10016033.BGIv1.0 annot-version=v1.0 ATGGCAACCCAAGCTGCACTTGCTCCTTCAAGAGTCCCAGCTGCCAACACCACCAGGCTCCTCTCTTCCAGCAGGATCACCCACTCTTTCCCTTCTCAAT GCTCCTCCAAGAGGTTGGAAGTGGTTGAGTTCTCAGGGCTTCGTGTCAAGAGTGCCACGGAGGGATCCTTGTTCCACGCAGTTGCTCCCAAGGCTGCAGG ATCTACCCCTGCCAGGTTGGAGCCAGTTGCTAAGTTGAAGGTTGCAATTAATGGGTTCGGACGCATTGGTAGGAACTTCTTGCGATGCTGGCATGGTCGC AAAGATTCTCCTCTTGAAGTTATTGTCGTCAACGACAGTGGTGGTGTTAGGAATGCTTCCCACTTGCTGAAGTACGACTCAATGCTAGGAACGTTCAAAG CCGATGTGAAAATCGTGGATGATGGCACCATCAGCGTTGATGGGAAGCTCATCAAAGTTGTCTCCAGCAGGGATCCCCTTAAGCTTCCATGGGCCGAGCT TGGAATCGACATTGTCATTGAGGGAACGGGAGTCTTCGTGGATGGACCGGGCGCTGGAAAACACATTCAAGCCGGTGCGAAGAAGGTTATCATCACTGCT CCTGCTAAAGGTGCTGACATTCCGACCTATGTCCTTGGTGTTAATGAAAAGGATTACGGCCATGATGTTGCCGATATTGTCAGCAATGCTTCTTGCACAA CAAACTGTCTGGCTCCTTTCGTCAAAGTCATCGACGAGGAATTCGGCATTGTCAAGGGAACCATGACTACCACTCACTCCTACACCGGAGATCAGAGGCT GTTGGATGCTTCGCACCGGGACCTGAGGAGAGCGAGGGCCGCAGCACTGAACATAGTGCCAACAAGCACAGGTGCGGCTAAAGCCGTGTCACTAGTCCTG CCTCAACTGAAGGGAAAACTCAACGGCATTGCTCTCCGTGTCCCCACACCCAACGTTTCGGTTGTGGACCTAGTCGTGAACGTTGCGAAGAAAGGAATCT CAGCTGAGGATGTCAATGCTGCCTTCAGGAAGGCAGCAGAAGGGCCCCTGAAGGGAATACTGGATGTGTGTGATGCTCCTCTTGTGTCTGTGGACTTCAG GTGCACCGATGTTTCGTCAACCATCGACTCCTCGTTGACTATGGTGATGGGAGATGATATGGTGAAGGTGGTTGCCTGGTATGATAATGAATGGGGATAC AGCCAAAGGGTGGTGGATTTGGCACATTTGGTGGCTAGCAAGTGGCCAGGAGTTGCTGGAGCAGGAAGTGGAGATCCTCTGGAAGACTTCTGTGAGACAA ACCCTTCTGAAGAGGAATGCAAAGTTTATGAAGCGTAG
AA sequence Show only first row Show all	>Lus10016033 pacid=23154458 polypeptide=Lus10016033 locus=Lus10016033.g ID=Lus10016033.BGIv1.0 annot-version=v1.0 MATQAALAPSRVPAANTTRLLSSSRITHSFPSQCSSKRLEVVEFSGLRVKSATEGSLFHAVAPKAAGSTPARLEPVAKLKVAINGFGRIGRNFLRCWHGR KDSPLEVIVVNDSGGVRNASHLLKYDSMLGTFKADVKIVDDGTISVDGKLIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA PAKGADIPTYVLGVNEKDYGHDVADIVSNASCTTNCLAPFVKVIDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVL PQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDAPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGY SQRVVDLAHLVASKWPGVAGAGSGDPLEDFCETNPSEEECKVYEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10016033 [exp]	0	1
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10035473 [exp]	1.4	0.9844
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025415 [exp]	2.0	0.9683
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10031088 [exp]	2.4	0.9592
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	3.9	0.9515
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10000593 [exp]	4.6	0.9472
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	4.9	0.9573
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031744 [exp]	5.5	0.9498
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10000518 [exp]	6.3	0.9467
AT5G57345			unknown protein		Lus10001632 [exp]	6.3	0.9467
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	6.6	0.9452

Compare expression of checked genes

Lus10016033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.