Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42960 110 / 5e-31 unknown protein AT5G16660 49 / 2e-07 unknown protein AT3G02900 46 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012242 [exp] 180 / 2e-58 AT1G42960 163 / 8e-52 unknown protein Lus10009524 [exp] 49 / 3e-07 AT3G02900 138 / 1e-41 unknown protein Lus10026866 [exp] 42 / 3e-05 AT5G16660 119 / 7e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254200 [exp] 113 / 6e-32 AT1G42960 141 / 5e-43 unknown protein Potri.007G064100 [exp] 106 / 2e-29 AT1G42960 147 / 1e-45 unknown protein Potri.013G078100 [exp] 53 / 7e-09 AT5G16660 134 / 1e-40 unknown protein Potri.019G041700 [exp] 52 / 2e-08 AT5G16660 134 / 9e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016034 pacid=23154387 polypeptide=Lus10016034 locus=Lus10016034.g ID=Lus10016034.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCTGCAATCTCAAACTCCCTTGTTCTCTCCAGAAACCCTCAGCTCTCCAACCTCTCTTCCGATTTCCTCTCAAGTCATCATTTGGACTCGT TCTTTTGGCCAGGTGTTGGGCCTACTGTTTTGTCCTTCAATGAAACTCGTCCTCGGAGCCTCCGACTTGCTCCATCGAGAAGGTCGCTCGTCGTTCAAGC TGCCAGTGATGGCCATAAAGGATCAGGCAGTTCGGGAATCTTCATTGGTGGCTTTGTGTTGGGAGGATTGGTTGTTGGTGCACTTGGATGCGTCTTGGCA CCTCAGATCAGCAAGGCATTAGCTGGGACTGACCGGAAGGAGCTAATGAGGAAGCTCCCCAAGTTCATCTATGATGAGGAGAAGGCTTTAGAGAAAACAC GAAAGATATTAACGGAGAAGATTGCACAGTTGAACTCCGCCATTGATGATGTGTCTGTACAACTAAGAACAGACGGTGACGATTCTCCTCCTCCCAAGAG CAAGAAGAAGAGTGCCAACCCTGATGGAATTGAAGCTGCAATTTGA
AA sequence Show only first row Show all	>Lus10016034 pacid=23154387 polypeptide=Lus10016034 locus=Lus10016034.g ID=Lus10016034.BGIv1.0 annot-version=v1.0 MSSSAISNSLVLSRNPQLSNLSSDFLSSHHLDSFFWPGVGPTVLSFNETRPRSLRLAPSRRSLVVQAASDGHKGSGSSGIFIGGFVLGGLVVGALGCVLA PQISKALAGTDRKELMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSVQLRTDGDDSPPPKSKKKSANPDGIEAAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42960			unknown protein		Lus10016034 [exp]	0	1
AT2G20690			lumazine-binding family protei...		Lus10021323 [exp]	9.2	0.7797
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10025384 [exp]	14.3	0.7837
AT2G41475			Embryo-specific protein 3, (AT...		Lus10043273 [exp]	16.5	0.7214
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042797 [exp]	21.2	0.7271
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10037491 [exp]	21.6	0.7315
AT3G44150			unknown protein		Lus10016181 [exp]	22.2	0.7719
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10037102 [exp]	23.4	0.7427
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10014069 [exp]	27.1	0.7704
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10006497 [exp]	28.3	0.7220
AT5G01090			Concanavalin A-like lectin fam...		Lus10027751 [exp]	34.4	0.6869

Compare expression of checked genes

Lus10016034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.