Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33640 547 / 0 DHHC-type zinc finger family protein (.1) AT4G15080 481 / 3e-162 DHHC-type zinc finger family protein (.1) AT3G22180 440 / 3e-146 DHHC-type zinc finger family protein (.1) AT1G69420 311 / 6e-98 DHHC-type zinc finger family protein (.1.2) AT4G01730 164 / 6e-44 DHHC-type zinc finger family protein (.1) AT3G26935 68 / 7e-12 DHHC-type zinc finger family protein (.1) AT4G24630 66 / 2e-11 DHHC-type zinc finger family protein (.1) AT5G04270 65 / 2e-11 DHHC-type zinc finger family protein (.1) AT3G56930 65 / 9e-11 DHHC-type zinc finger family protein (.1.2) AT5G41060 64 / 2e-10 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025157 [exp] 803 / 0 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1) Lus10039043 [exp] 471 / 8e-158 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 470 / 2e-157 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10026632 [exp] 321 / 2e-102 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10030426 [exp] 318 / 1e-101 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10037133 [exp] 310 / 2e-98 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10036798 [exp] 308 / 2e-96 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10038029 [exp] 179 / 3e-49 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 135 / 7e-34 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G006900 [exp] 786 / 0 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G018400 [exp] 449 / 2e-149 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 432 / 5e-149 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 380 / 8e-123 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.008G091700 [exp] 327 / 1e-103 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.010G163200 [exp] 315 / 4e-99 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.005G254432 [exp] 301 / 6e-97 AT2G33640 136 / 2e-35 DHHC-type zinc finger family protein (.1) Potri.014G112000 [exp] 226 / 1e-66 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 218 / 2e-63 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 68 / 9e-12 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10016036 pacid=23154371 polypeptide=Lus10016036 locus=Lus10016036.g ID=Lus10016036.BGIv1.0 annot-version=v1.0 ATGGCTAGGCGTCATGGATGGCAACTCCCCGTCCACTCTTTTCAGATTGTGGCTATAACAGTTTTCTTCTTGCTATCGGTTGCATACTACGCCTTCTTTG CGCCGTTCCTCGGGAAGGACATCTATGAATATATAGCTACTGGTGTTTACTCTCTTTTGGCTCTATCTGTCTTCGTTCTTTACGTGAGATGCACTGCCAT TGACCCTTCTGATCCCGGAATTCAGCTACAAGTTGCAGAGACAGTAGCAGACAAATCACAGAATGGCACTGATCTTCCTGGGAATGGAACTTCAGTTGCA GAACCCAACAAGACAGGATTGAGGAATGGAGGTCCATCTGCTAGCAATGGTCCCTCGTGTTGTGCAATGCTGGGAGGTTTTTTCTGTGGTTTTCTGTTCA AAGGAGACTGCCGTAGTGATGAAGACATGCATTCTGGAGAGGATGCTTTGTTCTGCACATTGTGCAATGCTGAGGTTCGCAAGTTCAGCAAGCATTGCAG AAGTTGTGATAAATGTGTTGATGGATTCGATCACCATTGTCGGTGGTTGAACAATTGCGTAGGGAGGCAAAATTACATCAGCTTTATAACTCTGATGGCA ACTAGCCTTGTTTGGCTTGCTGTTGAGTTTGGCGTTGGAGTTGCTGTCCTTGTCAGATGTTTCGTGGACCGGAAGACTATGGAACATCAAATATCAGAAA AGCTTGGCATTGGATTCTCCAGACCTCCATTTGCTACAGTAGTGGCCGTCTGCACTGTAGTATCTTTCCTTGCCACGGTGCCCCTGGGTGAACTATTCTT CTTCCACATGATTCTGATTAGAAAGGGTATAACAACGTACGAGTATGTCGTTGCCATGAGAACCCAAAGCGAACCTCCGGGACCATCAGTCGATGGAGGT GACCAGCAAAGTCTTCCATCATCACCCACCAGTTCAGCTGTAACAGCCATCAGCGGGAGAAGCTCCCTTGGCATGGGCTTGCAATACAAAGGTGCTTGGT GTACTCCTCCTCGAATCTTCATGGACAACCCGGATGAGATTATCCCACACTTGGAGCCAGGGCGTCTTCCATCGACCATCGATCCAGATACATTACCAGA AGGCGAGAAGGGGAAAAAACTACCACAACGTCCAGTTCGCATCAGTGCATGGAAACTCGCGAAGCTGGACTCCAGCGAGGCAATGAAGGCAGCTGCTAAG GCTAGAGCATCCTCGTCGGTTCTGAAGCCAATGAGTTCTCGACAGCACCAACCTTACGACGCTGATCATATGTCCGGGAGCAATTCGTACGCACCAAGTA ACATGAGCCAGACAAGCAGGGAGGATATTGAATCTTGCCGGCACAGCATAAGCAACATGAGCAGTGCAAACGTGTCCCAGCTTGCAACATCTCCATTGCC GCAACAAACTACTTCGAGTAGTCGAGATCATTTCAACCCAATGTATCAATCTTCAGCAAGACAATCTCCATTCTCAACTCAACCGGTCCAAACAAACGTG AATGCCACATCAGCAAATAGCAACAATGCGGCTCGAGTTCAATCAGGTGTGAGGAGGAACAACAACATGGAGAACATGAGAGCTTCTTCAGTTTATTGGG ACCCGGAAGCCGGGAGATTCGTGTCATCGACTTCTAGAGGTGTAGGTTCTAACAATGCTGGTTCTTCCCGGGCTCCGGGAACTGAACTTATGTACCCGGA GCAGTCGATATTTTACGGAGGGCCGGTTTTGGGTCAGCAGCAGCATGGGAGCAGCAGAGTGGGGAATGGGGAAAGAGGGAGGTCGCAGAGGGGTGGACAG CTCCCAGTGTTTGTTCCCAGTGATTATCATAATCAAAACCAGTTCCCTCCATCTTATAGATTGCCATGA
AA sequence Show only first row Show all	>Lus10016036 pacid=23154371 polypeptide=Lus10016036 locus=Lus10016036.g ID=Lus10016036.BGIv1.0 annot-version=v1.0 MARRHGWQLPVHSFQIVAITVFFLLSVAYYAFFAPFLGKDIYEYIATGVYSLLALSVFVLYVRCTAIDPSDPGIQLQVAETVADKSQNGTDLPGNGTSVA EPNKTGLRNGGPSASNGPSCCAMLGGFFCGFLFKGDCRSDEDMHSGEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRQNYISFITLMA TSLVWLAVEFGVGVAVLVRCFVDRKTMEHQISEKLGIGFSRPPFATVVAVCTVVSFLATVPLGELFFFHMILIRKGITTYEYVVAMRTQSEPPGPSVDGG DQQSLPSSPTSSAVTAISGRSSLGMGLQYKGAWCTPPRIFMDNPDEIIPHLEPGRLPSTIDPDTLPEGEKGKKLPQRPVRISAWKLAKLDSSEAMKAAAK ARASSSVLKPMSSRQHQPYDADHMSGSNSYAPSNMSQTSREDIESCRHSISNMSSANVSQLATSPLPQQTTSSSRDHFNPMYQSSARQSPFSTQPVQTNV NATSANSNNAARVQSGVRRNNNMENMRASSVYWDPEAGRFVSSTSRGVGSNNAGSSRAPGTELMYPEQSIFYGGPVLGQQQHGSSRVGNGERGRSQRGGQ LPVFVPSDYHNQNQFPPSYRLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	0	1
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007409 [exp]	2.0	0.9432
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10033756 [exp]	2.8	0.9348
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	2.8	0.9524
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10030554 [exp]	5.9	0.9366
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	6.2	0.9388
AT1G20670			DNA-binding bromodomain-contai...		Lus10022999 [exp]	6.6	0.9100
AT3G21710			unknown protein		Lus10039666 [exp]	8.1	0.9306
AT1G54650			Methyltransferase family prote...		Lus10006576 [exp]	8.5	0.9358
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10043201 [exp]	8.5	0.8965
AT1G52140			unknown protein		Lus10006040 [exp]	8.8	0.9352

Compare expression of checked genes

Lus10016036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.