Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20810 258 / 2e-87 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 102 / 2e-26 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G05420 46 / 3e-06 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G18170 45 / 1e-05 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G73655 43 / 9e-05 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G45680 40 / 0.0004 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT3G12340 40 / 0.0008 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 40 / 0.0008 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025158 [exp] 382 / 1e-135 AT1G20810 236 / 3e-78 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10035560 [exp] 96 / 8e-24 AT3G10060 296 / 2e-102 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10027729 [exp] 81 / 6e-18 AT3G10060 285 / 1e-97 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10038954 [exp] 45 / 1e-05 AT1G18170 193 / 1e-61 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031342 [exp] 43 / 5e-05 AT1G18170 261 / 3e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031700 [exp] 42 / 0.0002 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10024735 [exp] 41 / 0.0002 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10038905 [exp] 42 / 0.0003 AT4G25340 313 / 1e-102 FK506 BINDING PROTEIN 53 (.1.2) Lus10015029 [exp] 42 / 0.0003 AT4G25340 331 / 8e-110 FK506 BINDING PROTEIN 53 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254900 [exp] 267 / 7e-91 AT1G20810 272 / 5e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G096600 [exp] 99 / 3e-25 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G467100 [exp] 44 / 4e-05 AT4G26555 268 / 3e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G119800 [exp] 42 / 0.0002 AT4G19830 270 / 5e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10016037 pacid=23154416 polypeptide=Lus10016037 locus=Lus10016037.g ID=Lus10016037.BGIv1.0 annot-version=v1.0 ATGGCTTCCATTCCAATTGGGGGAAGCTTAGAGATGTGCAGGGCTTCCGGAACAGCTACTAATCATTACCATCGTAATTCATGGTTCACAGCTGCGGCGG CACTAGCAGACACAGGAGGCGGGTCAAGGAACCAAGTATCCTTATGCACTTCCAGGAGGAAGGCGACGATGCTCATCACCACATTTCCGACGTTACTACT GGGCGTGGTCGATATGCCATCATCAGCAGATGCCAGAGAGAGACGCAGCCGCAAGAAAATCCCTCCCGAAGACTATCTCACTAGCCCTGAAGGATTGAAA TATTTTGACATTGAGGAAGGAAAAGGACCCGTTGCCGAGAAAGGATCCACTGTTCTTGTGCATTTTGATTGCATCTACAGAGGAGTCACGGCTATTTCAA GTCGAGAGTCTAAGCTGCTTGCTGGAAATCGCATCATCGCCCAGCCGTACGAGTTCCAAGTAGGAGCGCCGCCGGGGAAGGAGAGGAAGAGAGAGTTCGT AGACAACCCAAATGGTCTCTTCTCAGCACAAGCTTCTCCTAAACCCCCACCTGCAATGTACACCATCACCCAGGGAATGAAAGTTGGAGGAAAGAGGACT GTCATCGTTCCGCCCGAAGCTGGATATGGAAAAAGAGGATTGTATGAGATTCCTCCAGGAGGCACATTTGAGCTCAATATTGAGCTACTGCAAGTAATGT CTCAATGA
AA sequence Show only first row Show all	>Lus10016037 pacid=23154416 polypeptide=Lus10016037 locus=Lus10016037.g ID=Lus10016037.BGIv1.0 annot-version=v1.0 MASIPIGGSLEMCRASGTATNHYHRNSWFTAAAALADTGGGSRNQVSLCTSRRKATMLITTFPTLLLGVVDMPSSADARERRSRKKIPPEDYLTSPEGLK YFDIEEGKGPVAEKGSTVLVHFDCIYRGVTAISSRESKLLAGNRIIAQPYEFQVGAPPGKERKREFVDNPNGLFSAQASPKPPPAMYTITQGMKVGGKRT VIVPPEAGYGKRGLYEIPPGGTFELNIELLQVMSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10016037 [exp]	0	1
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10031981 [exp]	1.7	0.9449
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10042346 [exp]	4.0	0.9395
AT2G47210	MYB		myb-like transcription factor ...		Lus10034713 [exp]	5.5	0.8993
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10025158 [exp]	6.0	0.8917
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10026086 [exp]	6.2	0.9303
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10030326 [exp]	6.6	0.9294
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10042812 [exp]	7.0	0.9174
AT5G27290			unknown protein		Lus10018966 [exp]	8.5	0.9218
AT2G01755			unknown protein		Lus10005230 [exp]	10.5	0.9263
AT1G56180			unknown protein		Lus10006532 [exp]	11.5	0.9066

Compare expression of checked genes

Lus10016037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.