Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76400 552 / 0 Ribophorin I (.1) AT2G01720 301 / 5e-97 Ribophorin I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025159 [exp] 723 / 0 AT1G76400 843 / 0.0 Ribophorin I (.1) Lus10023524 [exp] 313 / 2e-101 AT2G01720 650 / 0.0 Ribophorin I (.1) Lus10040410 [exp] 310 / 1e-100 AT2G01720 645 / 0.0 Ribophorin I (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G006600 [exp] 592 / 0 AT1G76400 817 / 0.0 Ribophorin I (.1) Potri.005G255000 [exp] 581 / 0 AT1G76400 816 / 0.0 Ribophorin I (.1) Potri.010G223500 [exp] 317 / 3e-103 AT2G01720 683 / 0.0 Ribophorin I (.1) Potri.008G038700 [exp] 314 / 7e-102 AT2G01720 677 / 0.0 Ribophorin I (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04597 [flax] [poplar] Ribophorin_I Ribophorin I
Representative CDS sequence Show only first row Show all	>Lus10016038 pacid=23154426 polypeptide=Lus10016038 locus=Lus10016038.g ID=Lus10016038.BGIv1.0 annot-version=v1.0 ATGACGCTCGGACATGTGGTTAAGCTTAGGCTTGATTTTCTTCTGTTGATCATTGCGTTCCTCGCCGTGCCTGCATTTTCCGATCTGATCGTTTCCAAAG TCGATCGACGGATTGATTTGACCTCTCAGATTGCACGCGTAACTTCTGCACTCAAGGTTGAGAATGTTGGTTCAAGTCCGGTTTCAGAGGTCCTGCTGTC TGTTCCTGACCCCCAGGCCAAGAATTTGGCTTATTTGACAGCCAAACTCAGTGAAGGGAAAGGGAAAGGGAAAGCCAAAACTTCTGCTGTTACTCTCAAG GTTGAACCAGCCAGTCCAAAAGGACTGCCACAGGCCTTGAGTTTCTATTCGGAACTTGTGAGAGAGATAGAGATCTCCCACTGGGGGAATGTGCAAGTCA CTGAACATTATAACATTGCCCATGGAGGTGCCATGAGCAAGGGTGAATTTTCAAGGCTTGATTTCCAGTCAAAACCCCTAATCCGGGGTGCATCAGCCTT TAAGCATCTTATTGCAAAATTGCCTCCCAGAGCTCGTTCTATTTATTATAGAGATGCTATTGGTAACATATCAACATCCCATGTGCGGAGCGACTCAAAG AAGACAGAAATACTAATTGAGCCTAGATTTCCAATATTTGGCGGTTGGAGAACTGCGTTTACTATTGGATATGGTTTGCCGCTTCAGGATTTTTTGTTCG AGTCAGAGGGGAAACGTTTCTTAGACTTCTCTTTTGGTTCCCCTGTGGTTGACTTGGTTATCGATAGTCTCATTTTGAAGGTTGTCTTGCCCGAGGGATC CAAGTATCTTTCTCATTCTACTCCGTTCTCTGTGCAAGAGGAGCAAGAGGTAAAAATGTCACACTTGGACATTTTTGGTCGACCTGTTGTCGTGCTGAAA AAGTCTAACGTTGTGCCAGAGCATAATCAACAATTCCAGGTCTACTACAAGTTCAATAAACTTGCAACTCTCACCGAGCCATTCATGTTGATTTTTGGAA TCTTCTTCCTCTTCGTTACTTGCATAGTTTACGTGCATGTTGACATGTCAATCTCCAAATCTTCTGCTTCCTATTTAGCAAAACTGCAGTGGGATGAGGT ACGAGCAACAGTGCAGCAGATTGAGAATACCATTAACCAGTGCTTAGCGGTGCACGAAAAGCTAGAAGCATCGCTACGTGATCTTTCTAGAACAGGAGAT GTCCAAGCTTGTAAAGCAGCCCGAAAGTCGGCCGATGGCTCGTTGAAGGAGCTGTCAAAAGAGTTAAAGCCCTTGATGTCACACTTGGTGTCTTCTCCTC TCTCTGGCGCTACTCATATATTACTCAAGGTGGAGGAGCTGGTAGCAAAGGAGAAAGAACTGGAGGAGCGGCTGATGGCAAAGCACTCGACCATAGTCGA TTCCTACGAGAAGAAACACGGAGGTCGGGAAACTGAGAACCGGGTCGCATCTGTCCAACAAAAGATTGTAGCTCTGAGGCAGGAAGTTGAAGATCTTCTC GAGTACATTGACGAGATATGA
AA sequence Show only first row Show all	>Lus10016038 pacid=23154426 polypeptide=Lus10016038 locus=Lus10016038.g ID=Lus10016038.BGIv1.0 annot-version=v1.0 MTLGHVVKLRLDFLLLIIAFLAVPAFSDLIVSKVDRRIDLTSQIARVTSALKVENVGSSPVSEVLLSVPDPQAKNLAYLTAKLSEGKGKGKAKTSAVTLK VEPASPKGLPQALSFYSELVREIEISHWGNVQVTEHYNIAHGGAMSKGEFSRLDFQSKPLIRGASAFKHLIAKLPPRARSIYYRDAIGNISTSHVRSDSK KTEILIEPRFPIFGGWRTAFTIGYGLPLQDFLFESEGKRFLDFSFGSPVVDLVIDSLILKVVLPEGSKYLSHSTPFSVQEEQEVKMSHLDIFGRPVVVLK KSNVVPEHNQQFQVYYKFNKLATLTEPFMLIFGIFFLFVTCIVYVHVDMSISKSSASYLAKLQWDEVRATVQQIENTINQCLAVHEKLEASLRDLSRTGD VQACKAARKSADGSLKELSKELKPLMSHLVSSPLSGATHILLKVEELVAKEKELEERLMAKHSTIVDSYEKKHGGRETENRVASVQQKIVALRQEVEDLL EYIDEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76400			Ribophorin I (.1)		Lus10016038 [exp]	0	1
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	1.0	0.9303
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	2.4	0.8845
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10022556 [exp]	3.0	0.8687
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10011477 [exp]	3.5	0.8789
AT4G13990			Exostosin family protein (.1)		Lus10007037 [exp]	3.9	0.8780
AT4G00090			Transducin/WD40 repeat-like su...		Lus10004027 [exp]	6.6	0.8280
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	9.3	0.8791
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	9.5	0.8694
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	9.9	0.8626
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10012318 [exp]	10.0	0.8682

Compare expression of checked genes

Lus10016038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.