Plant FIBer expression Database

Lus10016039 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76405 211 / 1e-70 unknown protein
AT1G20816 197 / 2e-65 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025161
[exp]
357 / 3e-128 AT1G76405 214 / 6e-72 unknown protein
Lus10025160
[exp]
310 / 8e-110 AT1G76405 161 / 5e-51 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G255100
[exp]
241 / 2e-82 AT1G76405 236 / 2e-80 unknown protein
PFAM info
Representative CDS sequence
>Lus10016039 pacid=23154424 polypeptide=Lus10016039 locus=Lus10016039.g ID=Lus10016039.BGIv1.0 annot-version=v1.0
ATGGATACGTCTCTGCGATACAGTGGAGACTCGAAATCTCTCAGGATTCATGCCAAGCAGAAGCTATCCATTGTTCCCAATACCCATCTGCAGTTTCATG
GGGAGCTGGATACAAAGGTTGGAGTTGCAAGGCAGCTGGATTCAAAGCTTGGAAACCCAAGTCATCTCAGTGGGTTTATAAGACACTTCCTCCCAGACTT
GGGTGCTAGTATGGGTGCGGGAGTGCAATATGACAAATATGAAAAGCTTCGGTACACCCTCCGAGGCAAGAAGGCCTTCCCTATCACCAGCGACGGTTTG
TTCAACTTCAATGTCAAGGGACGCTACTATCTTGACAAAAATTTCAAGGAGAAGCGACCAACAGCAGCAGCTGAGTTATCGTGGAGTATATTCAATTTCC
AGAAAGACCAAGATGTGCGATTCAAAGTCGGATATGAGGTGCTTGACAAGTTGCCATATCTGCAGATCAGAGAGAACAACTGGACATTCAATGCTGACAT
GAAGGGACGGTGGAATGTGAGATTTGATTTATGA
AA sequence
>Lus10016039 pacid=23154424 polypeptide=Lus10016039 locus=Lus10016039.g ID=Lus10016039.BGIv1.0 annot-version=v1.0
MDTSLRYSGDSKSLRIHAKQKLSIVPNTHLQFHGELDTKVGVARQLDSKLGNPSHLSGFIRHFLPDLGASMGAGVQYDKYEKLRYTLRGKKAFPITSDGL
FNFNVKGRYYLDKNFKEKRPTAAAELSWSIFNFQKDQDVRFKVGYEVLDKLPYLQIRENNWTFNADMKGRWNVRFDL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G76405 unknown protein Lus10016039
[exp]
0 1
AT1G72050 C2H2ZnF TFIIIA transcription factor IIIA (.1.... Lus10015657
[exp]
3.5 0.8762
AT4G12740 HhH-GPD base excision DNA repa... Lus10043074
[exp]
4.2 0.8818
AT2G37480 unknown protein Lus10025314
[exp]
4.8 0.8942
AT5G22320 Leucine-rich repeat (LRR) fami... Lus10005198
[exp]
10.0 0.8760
AT3G10260 Reticulon family protein (.1.2... Lus10020718
[exp]
11.0 0.8665
AT1G15200 protein-protein interaction re... Lus10003959
[exp]
20.0 0.8704
AT4G40030 Histone superfamily protein (.... Lus10000284
[exp]
20.4 0.8603
AT3G07870 F-box and associated interacti... Lus10029527
[exp]
21.5 0.8288
AT5G11350 DNAse I-like superfamily prote... Lus10008086
[exp]
21.6 0.8254
AT5G25800 Polynucleotidyl transferase, r... Lus10018935
[exp]
29.8 0.8248

Lus10016039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.