Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20823 147 / 1e-44 RING/U-box superfamily protein (.1) AT1G76410 143 / 3e-43 ATL8 RING/U-box superfamily protein (.1) AT2G17450 107 / 3e-29 RHA3A RING-H2 finger A3A (.1) AT5G05280 97 / 3e-25 RING/U-box superfamily protein (.1) AT4G35480 92 / 3e-23 RHA3B RING-H2 finger A3B (.1) AT1G49220 89 / 1e-21 RING/U-box superfamily protein (.1) AT1G49210 88 / 2e-21 RING/U-box superfamily protein (.1) AT3G18773 87 / 4e-21 RING/U-box superfamily protein (.1) AT1G49200 87 / 6e-21 RING/U-box superfamily protein (.1) AT3G10910 85 / 1e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025162 [exp] 194 / 3e-63 AT1G20823 190 / 6e-62 RING/U-box superfamily protein (.1) Lus10030728 [exp] 189 / 6e-61 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1) Lus10013210 [exp] 185 / 2e-59 AT1G20823 207 / 3e-68 RING/U-box superfamily protein (.1) Lus10005814 [exp] 101 / 1e-26 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10005817 [exp] 100 / 1e-25 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10005815 [exp] 97 / 5e-25 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10006787 [exp] 96 / 2e-24 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10006788 [exp] 96 / 2e-24 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10005818 [exp] 94 / 2e-24 AT1G49230 140 / 1e-42 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G006400 [exp] 174 / 3e-55 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1) Potri.005G255200 [exp] 165 / 7e-52 AT1G76410 163 / 2e-51 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 127 / 7e-37 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.007G064401 [exp] 113 / 2e-31 AT1G20823 118 / 2e-33 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 96 / 3e-24 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 94 / 9e-24 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 92 / 7e-23 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 90 / 1e-22 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 90 / 2e-22 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 89 / 3e-22 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10016040 pacid=23154351 polypeptide=Lus10016040 locus=Lus10016040.g ID=Lus10016040.BGIv1.0 annot-version=v1.0 ATGACTCGTCCAATCAGGTTGCTGAACTCCGTCAATTCCCCGCCGGACGACGACTCATCCCAGCCCTCCCCTCCTCCCGTGAATTCCGACTTCGTCGTCG TACTAGCAGCCCTCCTCTGCGCTCTCATCTGCGTCCTCGGCCTCGTCGCCGTCGTCCGCTGCGCTTGGATTCGCCGATTTTCATCCCGCGCCGGAGGCGG AGAAGGAGGAACGGAAGGAAATCCCCCGCCTCCTCGCCCTTCGGCGGCCAACAAGGGCATCAAGAAGAAGACCCTCCGCCCCCCCCCGAAACAGACATTC ACAACCGATTACGCCGCCAAATTCTCCGATTGCGCTATCTGCCTCGCGGAATTCGCCGTCGGGGATGAAATCCGGCTGCTCCCGCAGTGCGGCCACGGAT TCCACGTCAAATGCATCGACACCTGGCTGGGATCCCATTCTTCCTGCCCTTCGTGCCGCCAGATACTGGTCGCTTCCAGGTGCCAGAAGTGCGGCGGCCT CCCCCCTCCACCGCCGAGCTCCAGCGGCGTTGGCGATGGCGAAGGAGCTGAAACGGAGGCTAGATTGAAGGCGCGCGAGGATGACGGGAACCGCTTCTTG CCCTAG
AA sequence Show only first row Show all	>Lus10016040 pacid=23154351 polypeptide=Lus10016040 locus=Lus10016040.g ID=Lus10016040.BGIv1.0 annot-version=v1.0 MTRPIRLLNSVNSPPDDDSSQPSPPPVNSDFVVVLAALLCALICVLGLVAVVRCAWIRRFSSRAGGGEGGTEGNPPPPRPSAANKGIKKKTLRPPPKQTF TTDYAAKFSDCAICLAEFAVGDEIRLLPQCGHGFHVKCIDTWLGSHSSCPSCRQILVASRCQKCGGLPPPPPSSSGVGDGEGAETEARLKAREDDGNRFL P

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20823			RING/U-box superfamily protein...		Lus10016040 [exp]	0	1
AT1G20823			RING/U-box superfamily protein...		Lus10025162 [exp]	1.7	0.9019
AT4G33040			Thioredoxin superfamily protei...		Lus10013519 [exp]	4.9	0.8926
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10005965 [exp]	6.0	0.8739
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Lus10024271 [exp]	8.0	0.8587
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10034662 [exp]	8.7	0.8562
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10024323 [exp]	8.8	0.8609
AT3G09050			unknown protein		Lus10027783 [exp]	10.0	0.8802
AT3G09550			Ankyrin repeat family protein ...		Lus10015037 [exp]	10.2	0.8236
AT4G38225			unknown protein		Lus10013843 [exp]	10.4	0.8860
AT5G67140			F-box/RNI-like superfamily pro...		Lus10039564 [exp]	11.2	0.8775

Compare expression of checked genes

Lus10016040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.